Personal genomics

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Genomics (854)
Unknown (593)
Transcriptomics (232)
Proteomics (12)
Genomic (9)
Clinical (2)
Methylation profiling (2)
Metabolomics (1)

Organisms

Homo sapiens (335)
Mus musculus (72)
Rattus norvegicus (31)
Arabidopsis thaliana (16)
Saccharomyces cerevisiae (11)
Drosophila melanogaster (8)
Salmo salar (5)
Gallus gallus (4)
Apis mellifera (3)
Campylobacter jejuni (3)
Mycobacterium tuberculosis (3)
Danio rerio (3)
Bos taurus (3)
Schizosaccharomyces pombe (2)
Rattus rattus (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Mycobacterium tuberculosis H37Rv (2)
Caenorhabditis elegans (2)
Sus scrofa (2)
Chamaelirium luteum (1)
Caldicellulosiruptor kronotskyensis (1)
Oreochromis niloticus (1)
Anabaena (1)
Sorghum propinquum (1)
Bacillus anthracis str. Ames (1)
Cynoglossus semilaevis (1)
Pseudomonas protegens (1)
Tigriopus californicus (1)
Salmonella enterica subsp. enterica (1)
Picea engelmannii x Picea glauca (1)

Organisms

Homo sapiens (218)
Mus musculus (16)
human gut metagenome (8)
soil metagenome (6)
Rattus norvegicus (4)
Scaphiopus couchii (3)
Escherichia coli (3)
unidentified (3)
Anguilla japonica (2)
human skin metagenome (2)
Mammalia (2)
rat gut metagenome (2)
Caenorhabditis elegans (2)
Sus scrofa (2)
sediment metagenome (2)
Sensonator valentiensis (1)
Citrus wilsonii (1)
Psychrobacter sp. TAE2020 (1)
pharmaceutical-degrading enrichment culture (1)
Streptomyces sp. CT34 (1)
Anigozanthos manglesii (1)
Myotis rufoniger (1)
Limnospira indica PCC 8005 (1)
Dyadobacter fermentans (1)
Indigofera tinctoria (1)
Thauera aminoaromatica (1)
Microchloropsis gaditana (1)
Myotis lucifugus (1)
Homo sapiens neanderthalensis (1)
Zehneria grandibracteata (1)

Repository

ENA (528)
biostudies-arrayexpress (388)
EGA (146)
geo (18)
dbGaP (9)
MassIVE (8)
EVA (7)
pride (4)
MetaboLights (1)
NODE (1)

Tissue

B cell (1)
Blood (1)
Brain (1)
Liver (1)
Prostate gland (1)
Small intestine (1)
Spleen (1)
Testis (1)
Venom (1)

Disease

Normal (3)
Chronic granulomatous disease (1)
Dukes D primary colon cancer (1)
Colon cancer metastasis (1)
IRAK-4 Q293X mutation (1)
Infected (1)
Benign adenoma (1)
S enteritidis (1)
Central nervous system cancer (1)
Neoplastic Syndromes, Hereditary (1)
Pancreatic Neoplasms (1)
Lymphoma (1)

Technology Type

Illumina HiSeq 2000 (7)
Mass Spectrometry (4)
Illumina HiSeq 2500 (2)
ION_TORRENT, Ion Torrent PGM (1)
Complete Genomics, COMPLETE_GENOMICS, Illumina Genome Analyzer IIx (ILLUMINA) (1)
Codelink Human Whole Genome Bioarray (1)
OXFORD_NANOPORE, MinION (1)
Applied Biosystems (1)
COMPLETE_GENOMICS, Complete Genomics (1)
Illumina Human Core Exome 12v1-1_a (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina Omni 2.5, Illiumina Omni 2.5 (1)
HumanOmni1 Quad BeadChip (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HumanExome-12v1_A (1)
Illumina Human 1.2M Duo custom BeadChips v1 - Genome Studio, Illumina Human 660K Quad BeadChips - Illuminus, Illumina Human-Ref 8 v3.0 expression array (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Complete Genomics, unspecified (1)
Affymetrix SNP 6.0, Illumina HT 12, Aperio image - H&E stained tissue_section (1)
Illumina Genome Analyzer IIx (1)
Illumina MiSeq (1)
Illumina Genome Analyzer II (1)
Mass spectrometry (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
Shotgun proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (19)
Illumina HiSeq 4000 (13)
Illumina HiSeq 2000 (8)
NextSeq 500 (5)
Illumina HiSeq 2500 (5)
Single cells were captured using the 10x Genomics Chromium Controller. (4)
NextSeq 2000 (4)
Illumina MiSeq (4)
Illumina Genome Analyzer II (3)
Axon GenePix 4000B scanning hardware (3)
Ion Torrent PGM (3)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (2)
Illumina HiScanSQ (2)
GenePix Personal 4100A [Axon Instruments] (2)
Scanning hardware (2)
N/A (2)
Illumina HiSeq 1000 (2)
Illumina NOVAseq 6000 (1)
3’ 10X Genomics Chromium (1)
Chromium Next GEM Chip G (1)
10X v3 (1)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina) (1)
RNeasy Plant Mini Kit (QIAGEN) (1)
2D clinostat (1)
Covaris sonicator, PCR thermocycler, magnetic rack for SPRI bead clean-up (1)
Liquid-nitrogen mortar and pestle, benchtop microcentrifuge, vortex mixer (1)
Dissecting tools, liquid nitrogen, −80 °C freezer (1)
Advanced Sequencing Facility (1)
Epidermal cells : Trypsin dissociation / Dermal cells :MACS Whole Skin Dissociation Kit (1)
Controlled-environment growth chamber (short-day; 8 h light / 16 h dark) (1)

Publication Date

2012 (52)
2014 (43)
2010 (42)
2013 (41)
2015 (37)
2016 (26)
2011 (24)
2005 (22)
2008 (19)
2026 (17)
2025 (16)
2017 (14)
2007 (12)
2022 (9)
2021 (9)
2009 (9)
2024 (8)
2020 (7)
2018 (6)
2006 (6)
2023 (4)
2019 (3)

CHEBI ID

CHEBI:77359 (1)
CHEBI:39251 (1)
CHEBI:84874 (1)
CHEBI:28941 (1)
CHEBI:37070 (1)
CHEBI:43722 (1)
CHEBI:84890 (1)
CHEBI:45919 (1)
CHEBI:39153 (1)
CHEBI:70850 (1)
CHEBI:39250 (1)
CHEBI:68503 (1)
CHEBI:30813 (1)
CHEBI:32389 (1)
CHEBI:32425 (1)
CHEBI:53488 (1)
CHEBI:91315 (1)
CHEBI:741548 (1)
CHEBI:30754 (1)
CHEBI:30831 (1)
CHEBI:42504 (1)
CHEBI:27386 (1)
CHEBI:36036 (1)
CHEBI:32365 (1)
CHEBI:30805 (1)
CHEBI:32368 (1)
CHEBI:29019 (1)
CHEBI:15611 (1)
CHEBI:26271 (1)
CHEBI:18237 (1)

Metabolite Name

Glucose (and isomers) (1)
Valeric/Isovaleric Acid (1)
Butyric/Isobutyric Acid (1)
Caproic Acid (1)
Hippuric Acid (1)
Propionic Acid (1)

First Public Date

2026 (59)
2024 (59)
2022 (48)
2025 (43)
2014 (41)
2021 (40)
2020 (37)
2013 (35)
2023 (33)
2015 (32)
2018 (31)
2019 (24)
2017 (23)
2016 (20)
2012 (1)
2011 (1)
2010 (1)

Classification

bacteria (7)
fungi (1)
viruses (1)

Study status

Active, not recruiting (1)
Recruiting (1)

Study type

Transcription profiling by array (143)
ChIP-seq (126)
Methylation profiling by high throughput sequencing (23)
RNA-seq of coding RNA (22)
RNA-seq of coding RNA from single cells (20)
DNA-seq (13)
Unknown experiment type (8)
Comparative genomic hybridization by array (8)
Methylation profiling by array (4)
RNA-seq of non coding RNA (4)
Human - Single-cell sequencing (3)
Transcription profiling by tiling array (3)
Cell line - High-throughput sequencing (2)
Interventional (2)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
Cell line - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Hi-C (1)
Other (1)
MicroRNA profiling by array (1)

Release Date

2013 (70)
2021 (69)
2012 (67)
2022 (66)
2015 (66)
2014 (64)
2025 (54)
2019 (53)
2016 (53)
2020 (51)
2023 (49)
2018 (48)
2017 (48)
2024 (46)
2010 (46)
2011 (30)
2008 (24)
2005 (22)
2026 (20)
2007 (15)
2009 (13)
2006 (7)

Lab affiliation

Division of Molecular Genetics, Oncode Institute, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands; (1)
Emory University (1)
Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (1)
The Institute of Cancer Research (1)

Location

United States (2)

Keyword

Lynch syndrome (1)
Hereditary breast and ovarian cancer (1)

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The EN-TEx Resource for Personal Functional Genomics

An overall goal of functional genomics has been to measure the impact of variants on molecular endophenotypes (e.g. gene expression levels or the degree of TF binding) and relate this to organismal traits and disease phenotypes. However, all the experiments to date have been described relative to a ...

ORGANISM(S): Homo sapiens (Human)

2024-05-22 | PXD022787 | Pride

Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years.

Not available

S-EPMC5791365 | biostudies-literature

Personal Neoantigen Cancer Vaccines

PRJNA401959 | ENA

HOPE-Genomics Intervention for the Improvement of Cancer Patient Knowledge of Genomics

This clinical trial studies the effectiveness of a web-based cancer education tool called Helping Oncology Patients Explore Genomics (HOPE-Genomics) in improving patient knowledge of personal genomic testing results and cancer and genomics in general. HOPE-Genomics is a web-based education tool that...

2378933 | ecrin-mdr-crc

Anticipation of Personal Genomics Data Enhances Interest and Learning Environment in Genomics and Molecular Biology Undergraduate Courses.

Not available

S-EPMC4524698 | biostudies-literature

Personal genome sequencing of Malaysian individual

SYSTEMATIC PHARMACOGENOMIC ANALYSIS USING A PERSONAL GENOME OF A MALAY INDIVIDUAL

PRJEB4210 | ENA

Bacterial diversity in home and personal care products

PRJEB19391 | ENA

Implementation and evaluation of personal genetic testing as part of genomics analysis courses in German universities.

Not available

S-EPMC10074719 | biostudies-literature

Interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication

Full title: Genomics based analysis of interactions between developing B-lymphocytes and stromal cells reveal complex interactions and two-way communication In order to identify extra cellular signals that promote B lymphocyte development we created a database with approximately 400 receptor ligand...

ORGANISM(S): Mus musculus

2010-01-05 | E-GEOD-19729 | biostudies-arrayexpress

Identification of driver genes in uterine leiomyosarcoma: whole-genome sequencing

Whole genome sequencing by Complete Genomics was performed on two leiomyosarcoma samples and their matched germline

ORGANISM(S): Homo sapiens

2018-07-02 | E-MTAB-5764 | biostudies-arrayexpress

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1705 Results

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