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ProteomicsComamonas KF-1 PET degradation
Cellular and extracellular fractions of Comamonas testosteroni KF-1 grown on PET +/- acetate, labeled via diDO-IPTL (Waldbauer et al. 2017 Analytical Chemistry) for protein expression quantitation
ORGANISM(S): Comamonas Testosteroni Kf-1 (ncbitaxon:399795) 
MSV000095794 | MassIVE
GenomicsLong Span DNA Paired-End-Tag (DNA-PET) Sequencing Strategy for the Interrogation of Genomic Structural Mutations
Structural variations (SVs) contribute significantly to the variability of the human genome and extensive genomic rearrangements are a hallmark of cancer. Genomic DNA paired-end-tag (DNA-PET) sequencing is an attractive approach to identify genomic SVs. The current application of PET sequencing with...
ORGANISM(S): Homo sapiens 
2012-10-04 | E-GEOD-32674 | biostudies-arrayexpress
GenomicsAn Estrogen Receptor α-bound Human Chromatin Interactome
We developed Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) for de novo detection of global chromatin interactions, and comprehensively mapped the chromatin interaction network bound by estrogen receptor α (ERα) in the human genome. We performed 454 and Illumina sequencing an...
ORGANISM(S): Homo sapiens 
2009-09-11 | E-GEOD-18046 | biostudies-arrayexpress
TranscriptomicsExtensive promoter-centered chromatin interactions provide a topological basis for transcription regulation
Higher-order chromosomal organization for transcription regulation is poorly understood in eukaryotes. Using genome-wide Chromatin Interaction Analysis with Paired-End-Tag sequencing (ChIA-PET), we mapped long-range chromatin interactions associated with RNA polymerase II in human cells and uncovere...
ORGANISM(S): Homo sapiens 
2012-01-20 | E-GEOD-33664 | biostudies-arrayexpress
GenomicsChryseobacterium sp. PET-29 isolate:landfill
Chryseobacterium sp. PET-29 isolate:landfill Genome sequencing
PRJNA886060 | ENA
GenomicsAcinetobacter sp. PET-6 isolate:plastic waste
Acinetobacter sp. PET-6 isolate:plastic waste Genome sequencing
PRJNA1443046 | ENA
TranscriptomicsPet-1 Switches Transcriptional Targets Postnatally to Regulate Maturation of Serotonin Neuron Excitability.
Newborn neurons enter an extended maturation stage, during which they acquire excitability characteristics crucial for development of presynaptic and postsynaptic connectivity. In contrast to earlier specification programs, little is known aboutthe regulatory mechanisms that control neuronal maturat...
ORGANISM(S): Mus musculus 
2016-01-08 | E-GEOD-74315 | biostudies-arrayexpress
TranscriptomicsThe genomic landscape of cohesin-associated chromatin interactions
Cohesin is implicated in establishing tissue-specific DNA loops that target enhancers to promoters, and also localizes to sites bound by the insulator protein CTCF, which blocks enhancer-promoter communication. However, cohesin-associated interactions have not been characterized on a genome-wide sca...
ORGANISM(S): Mus musculus 
2013-05-22 | E-GEOD-42237 | biostudies-arrayexpress
Transcriptomicscomprehensive chromatin interaction in TNF alpha stimulated HUVECs
HUVECs were stimulated and samples were prepared after 0 and 30 min. Chromatin interaction mediated by active RNA polymerase II was detected by ChIA-PET. Samples were made afrer 0 and 30 min after TNF alpha stimulation.
ORGANISM(S): Homo sapiens 
2012-10-13 | E-GEOD-41553 | biostudies-arrayexpress
TranscriptomicsTranscriptomic responses to transparent and blue PET micro-nanoplastics in Arabidopsis thaliana
To get further insights on the micro-nanoplastic (MNP) effects on plants, the aim of this study was to: 1) shed light on the transcriptome changes provoked by two different polyethylene terephthalate (PET) MNPs in plant roots; 2) determine their effects on key plant growth parameters in hydroponical...
ORGANISM(S): Arabidopsis thaliana 
2024-12-31 | E-MTAB-13532 | biostudies-arrayexpress
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