Peter Thomas T - OmicsDI

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Unknown (394)
Genomics (197)
Transcriptomics (115)
Proteomics (18)
Metabolomics (9)
Models (4)
Genomic (2)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (245)
Mus musculus (36)
Taeniopygia guttata (11)
Caenorhabditis elegans (3)
Arabidopsis thaliana (3)
Sturnus vulgaris (2)
Rattus norvegicus (2)
Mycobacterium tuberculosis H37Rv (2)
Arabidopsis (1)
Loxia curvirostra (1)
Trichophyton rubrum (1)
Methanosarcina mazei (1)
Papio anubis (1)
metagenome (1)
Phoenix dactylifera (1)
Leishmania major (1)
Tetranychus urticae (1)
Papio hamadryas (1)
synthetic construct (1)
Zea mays (1)
Plasmodium falciparum (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Staphylococcus (1)
Staphylococcus aureus (1)
Staphylococcus capitis (1)
Staphylococcus epidermidis (1)
Fusarium sinicum (1)

Repository

EGA (193)
biostudies-arrayexpress (120)
MetaboLights (9)
MassIVE (7)
pride (6)
BioModels (3)
dbGaP (2)
PeptideAtlas (2)
FAIRDOMHub (1)
GPMDB (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Cell culture (3)
Cell line cell (2)
Epithelial cell (1)
Stromal cell (1)
Whole body (1)

Disease

Pulmonary tuberculosis (2)
Malaria (1)
Apparently healthy (1)
Not Available (1)
Brain glioblastoma multiforme (1)
Glioblastoma (1)
Malignant neoplasm of ovary (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (8)
Mass Spectrometry (6)
Shotgun proteomics (4)
Illumina HiSeq 2000 (3)
Illumina HiSeq 2500 (3)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina Genome Analyzer II (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0- (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina HiSeq 2000, unknown (1)
Illumina MiSeq (1)
Illumina OncoArray (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina NovaSeq 6000 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Unix (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 1000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Instrument (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive Plus (1)
API 4000 QTRAP (AB Sciex) (1)
Flow injection analysis MS - (1)
LECO Pegasus III (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - HILIC (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)

Publication Date

2014 (24)
2012 (23)
2013 (16)
2008 (11)
2015 (10)
2011 (10)
2022 (7)
2023 (6)
2016 (5)
2010 (5)
2009 (5)
2024 (4)
2018 (4)
2020 (3)
2017 (3)
2005 (3)
2004 (3)
2019 (2)
2025 (2)
2007 (1)
2006 (1)
2026 (1)
2021 (1)

UNIPROT ID/AC

P42225 (2)
Q9LQT8 (1)
Q9MAA7 (1)
1433B_HUMAN (1)
1433E_HUMAN (1)
1433F_HUMAN (1)
1433G_HUMAN (1)
1433S_HUMAN (1)
1433T_HUMAN (1)
1433Z_HUMAN (1)
2A5D_HUMAN (1)
2A5E_HUMAN (1)
2A5G_HUMAN (1)
2AAA_HUMAN (1)
2AAB_HUMAN (1)
2ABA_HUMAN (1)
2ABB_HUMAN (1)
2ABD_HUMAN (1)
3HIDH_HUMAN (1)
4F2_HUMAN (1)
5NTC_HUMAN (1)
6PGD_HUMAN (1)
6PGL_HUMAN (1)
8ODP_HUMAN (1)
9606.ENSP00000233596 (1)
9606.ENSP00000268624 (1)
9606.ENSP00000291295 (1)
9606.ENSP00000299157 (1)
9606.ENSP00000330842 (1)
9606.ENSP00000331127 (1)

ENSEMBL ID

ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:1148 (2)
CHEBI:136345 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:15843 (2)
CHEBI:16010 (2)
CHEBI:16235 (2)
CHEBI:16449 (2)
CHEBI:16610 (2)
CHEBI:16704 (2)
CHEBI:16708 (2)
CHEBI:16737 (2)
CHEBI:16750 (2)
CHEBI:16796 (2)
CHEBI:16811 (2)
CHEBI:16865 (2)
CHEBI:16958 (2)
CHEBI:17084 (2)
CHEBI:17154 (2)
CHEBI:17268 (2)
CHEBI:17270 (2)
CHEBI:17306 (2)
CHEBI:17368 (2)
CHEBI:17568 (2)
CHEBI:17596 (2)
CHEBI:29590 (1)
CHEBI:29605 (1)
CHEBI:30088 (1)
CHEBI:32902 (1)
CHEBI:32906 (1)

Metabolite Name

Glycerol 3-phosphate (2)
Uracil (2)
()-2-(2-Furanyl)pyrrolidine (1)
()-2-Methylbutanal (1)
()-2-Methylpentanoic acid (1)
()-2-Pentanol acetate (1)
()-Furaneol (1)
()-Furilazole (1)
()-Glycerol 1,2-diacetate (1)
()-Hydroxycitronellol (1)
()-Pelletierine (1)
()-Sulfobutanedioic acid (1)
()-Tryptophan (1)
()-cis-Linalyl oxide (1)
()-threo-1-(4-Hydroxyphenyl)-1,2,3-propanetriol (1)
(+)-3-(3,4-Methylenedioxyphenyl)-1,2-propanediol (1)
(+)-cis-Linalool 3,7-oxide (1)
(+/-)-1-Acetoxy-1-ethoxyethane (1)
(+/-)-2-(5-Methyl-5-vinyltetrahydrofuran-2-yl)propionaldehyde (1)
(+/-)-3-(Ethylthio)butanol (1)
(+/-)-4-Mercapto-4-methyl-2-pentanol (1)
(+/-)-Ethyl 3-acetoxy-2-methylbutyrate (1)
(+/-)-Methyl 5-acetoxyhexanoate (1)
(-)-3-Cyanomethyl-3-hydroxy-1H-indol-2(3H)-one (1)
(-)-5-(2-Propenyl)-2-oxazolidinethione (1)
(-)-Bornesitol (1)
(-)-Salsoline (1)
(-)-trans-3,4-Dihydro-4,8-dihydroxy-3-methyl-1H-2-benzopyran-1-one (1)
(1-Methylethenyl)pyrazine (1)
(12R)-15-amino-13-({2-[(4-amino-4-carboxy-1-hydroxybutylidene)amino]-2-[(carboxymethyl)-C-hydroxycarbonimidoyl]ethyl}sulfanyl)-3,7,12-trihydroxy-4,4,6,8,12,16-hexamethyl-17-(2-methyl-1,3-thiazol-4-yl)-5-oxoheptadec-16-enoic acid (1)

IsPrivate

False (3)

Submitter Keywords

Manuscript Accepted (1)

Modelling Approach

Ordinary differential equation model (3)

Study type

Transcription profiling by array (84)
Comparative genomic hybridization by array (10)
RNA-seq of coding RNA (9)
Methylation profiling by array (5)
ChIP-seq (4)
ChIP-chip by tiling array (2)
RNA-seq of coding RNA from single cells (2)
High-throughput sequencing (1)
Other (1)
Proteomic profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (51)
2021 (49)
2023 (44)
2012 (41)
2025 (40)
2014 (39)
2018 (28)
2013 (28)
2020 (27)
2024 (27)
2015 (26)
2016 (21)
2019 (18)
2011 (16)
2017 (14)
2008 (11)
2010 (10)
2009 (7)
2026 (5)
2005 (4)
2004 (4)
2007 (3)
2006 (1)

Lab affiliation

Global Health Institute, EPFL, Lausanne, Switzerland (2)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP) Institut Curie (1)
ProCan, Children's Medical Research Institute, 214 Hawkesbiry Rd, Westmead, NSW 2145 Australia (1)
Sir Peter MacCallum Department of Oncology, Peter MacCallum Cancer Centre, The University of Melbourne, Victoria 3000, Australia (1)

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Deletion of glycerol channel aquaporin-9 (Aqp9) impairs long-term blood glucose control in C57BL/6 leptin receptor-deficient (db/db) obese mice

Deletion of the glycerol channel aquaporin-9 (Aqp9) reduces postprandial blood glucose levels in leptin receptor deficient (db/db) obese mice on a C57BL/6×C57BLKS mixed genetic background. Furthermore, shRNA mediated reduction of Aqp9 expression reduces liver triacylglycerol (TAG) accumulation in a ...

2015-09-28 | MTBLS219 | MetaboLights

Distinct cytokine-driven responses of activated blood gammadelta T cells: insights into unconventional T cell pleiotropy.

Not available

S-EPMC3915340 | biostudies-literature

Epithelia Use Butyrophilin-like Molecules to Shape Organ-Specific γδ T Cell Compartments.

Not available

S-EPMC5037318 | biostudies-literature

Interorganelle lipid flux revealed by enzymatic mass tagging in vivo

The distinct activities of cellular organelles are dependent on the proper function of their membranes. Coordinated membrane biogenesis of the different organelles necessitates interorganelle transport of lipids from their site of synthesis to their destination membranes. Several proteins and traffi...

2022-03-22 | MTBLS3415 | MetaboLights

Tracking immunodynamics by identification of S-G₂/M-phase T cells in human peripheral blood.

Not available

S-EPMC7527781 | biostudies-literature

Diagnostic microRNA profiling in cutaneous T-cell lymphoma (CTCL)

Cutaneous T-cell lymphomas (CTCL) are the most frequent primary skin lymphomas. Nevertheless, diagnosis of early disease has proven difficult due to a clinical and histological resemblance to benign inflammatory skin diseases. To address if microRNA (miRNA) profiling can discriminate CTCL from benig...

ORGANISM(S): Homo sapiens

2011-11-22 | E-GEOD-31408 | biostudies-arrayexpress

TIM3-mediated differentiation of IL-10-producing CD25<sup>+</sup> B cells by expanded regulatory T cells.

Not available

S-EPMC12743028 | biostudies-literature

SARS-CoV-2 breakthrough infection induces rapid memory and de novo T cell responses.

Not available

S-EPMC9970913 | biostudies-literature

Influenza-specific lung-resident memory T cells are proliferative and polyfunctional and maintain diverse TCR profiles.

Not available

S-EPMC5785253 | biostudies-literature

PD-1 defines a distinct, functional, tissue-adapted state in Vδ1<sup>+</sup> T cells with implications for cancer immunotherapy.