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ProteomicsProteomics Analysis of the UMK2 Mutation in Arabidopsis thaliana seeds
We compared the proteome of dry as well as germinating seeds of Arabidopsis thaliana wild type Col-0 with the respective proteomes from an umk2 (AT4G25280) frameshift mutant. Germinating seeds were incubated for 48 hours in 1/2-MS medium in Petri dishes at 4 degree Celsius followed by 24 hours of a...
ORGANISM(S): Arabidopsis Thaliana (ncbitaxon:3702) 
2023-07-03 | MSV000092331 | MassIVE
TranscriptomicsRice Lateral Root Inducible System timeseries
To transcriptionally characterize lateral root development in rice, we subjected the rice LRIS to genome-wide transcript profiling via RNA-sequencing. Taking into account the appearance of the first (stage I primordium) cell divisions starting from 6 hours after NAA treatment, we sampled at 2 hours ...
ORGANISM(S): Oryza sativa Japonica Group 
2023-08-24 | E-MTAB-13094 | biostudies-arrayexpress
ProteomicsGlobal mapping of GalNAc-T isoform-specificities and O-glycosylation site-occupancy in a tissue-forming human cell line
Mucin-type-O-glycosylation on proteins is integrally involved in human health and disease and is coordinated by an enzyme family of 20 N-acetylgalactosaminyltransferases (GalNAc-Ts). Detailed knowledge on the biological effects of site-specific O-glycosylation is limited due to lack of information o...
ORGANISM(S): Homo sapiens (Human) 
2022-10-22 | PXD036791 | Pride
Galnt   fibronectin  ldlr  lrp  col17a1 Differential glycoproteomics. Crispr 3d tissue models  oragnoid 
UnknownTrends in the diagnostic delay and pathway for amyotrophic lateral sclerosis patients across different countries.
Not available
S-EPMC9886675 | biostudies-literature
TranscriptomicsLong noncoding RNA expression during human B-cell development
Long noncoding RNAs (lncRNAs) have emerged as important regulators of diverse cellular processes, but their roles in the developing immune system are poorly understood. In this study, we analysed lncRNA expression during human B-cell development by array-based expression profiling of eleven distinct...
ORGANISM(S): Homo sapiens 
2016-02-09 | E-GEOD-69033 | biostudies-arrayexpress
ProteomicsThe fungivorous phagocyte Protostelium aurantium targets redox homeostasis and cell wall integrity during intracellular killing of Candida parapsilosis
Predatory interactions among microbes are a major evolutionary driving force for biodiversity. The fungivorous amoeba Protostelium aurantium has a wide fungal food spectrum including major pathogenic members of the genus Candida. Phagocytic feeding by P. aurantium is highly effective with C. parapsi...
ORGANISM(S): Planoprotostelium fungivorum Candida parapsilosis 
2021-12-01 | PXD023816 | Pride
Amoeba Lc-ms/ms Protostelium Candida parapsilosis Redox homeostasis Predation 
ProteomicsPhosphoproteomic analysis of Arabidopsis root in response to cellooligomers (cellotriose)
Cellulose is the major polysaccharide in the primary and secondary cell wall. Its breakdown generates short-chain cellooligomers (COs) which induce Ca2+-dependent cell wall integrity (CWI) responses. Recently, a mutant (cork1) which did not respond to COs was identified. To find out the early phosph...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-09-23 | PXD033224 | Pride
Phosphoproteomics Cellooligomer Cellotriose Malectin Cell wall integrity 
TranscriptomicsTimeseries microarray of Arabidopsis thaliana root tips treated with(out) ethylene followed by hypoxia and recovery
Preceding hypoxia by an ethylene treatment improves root tip survival. To identify key players and processes mediating ethylene enhanced tolerance, the transcriptomic response of root tips was investigated directly after ethylene or control pretreatment, 2 and 4 hours of subsequent hypoxia, and 1 ho...
ORGANISM(S): Arabidopsis thaliana 
2022-02-01 | E-MTAB-11231 | biostudies-arrayexpress
TranscriptomicsGene expression profiles of normal B-cell subsets from sternal bone marrow
Mononuclear cells were isolated from the sternal bone marrow and prepared for multiparametric flow cytometry using an optimized and validated protocol. B-cell subsets of PreBI, PreBII, Immature, Naive, Memory and Plasma cells were isolated and a al of 38 gene expression profiles were generated using...
ORGANISM(S): Homo sapiens 
2016-02-09 | E-GEOD-68878 | biostudies-arrayexpress
MetabolomicsThe downside of metabolic diversity: Postingestive rearrangements by specialized insects
Deploying toxins in complex mixtures is thought to be advantageous and is observed during antagonistic interactions in nature. Toxin mixtures are widely utilized in medicine and pest control, as they are thought to slow the evolution of detoxification counterresponses in the targeted organisms. Here...
2022-12-04 | MTBLS3676 | MetaboLights
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