Pfa - OmicsDI

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Unknown (559)
Genomics (181)
Transcriptomics (77)
Proteomics (53)
Metabolomics (12)
Methylation profiling (10)
Other (3)

Organisms

Mus musculus (67)
Homo sapiens (67)
Schizophyllum commune H4-8 (44)
Mycobacterium tuberculosis SP7 (44)
Oryza sativa Japonica Group (44)
Candidatus Endoriftia persephonae (44)
Mycobacterium tuberculosis SP10 (44)
Mycobacterium tuberculosis SP13 (44)
Mycobacterium tuberculosis SP22 (44)
Chlamydomonas reinhardtii (44)
Pyricularia oryzae P131 (44)
Drosophila melanogaster (6)
Schizosaccharomyces pombe (4)
Schmidtea mediterranea (3)
Phallusia mammillata (2)
synthetic construct (2)
Saccharomyces cerevisiae S288C (2)
Caenorhabditis elegans (2)
cellular organisms (2)
Chamaelirium luteum (1)
Caenorhabditis briggsae (1)
Schizosaccharomyces pombe 972h- (1)
Drosophila virilis (1)
Macaca fascicularis (1)
Rattus norvegicus (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Canis lupus familiaris (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)

Organisms

Homo sapiens (43)
Mus musculus (39)
Saccharomyces cerevisiae S288C (1)
Rhodococcus erythropolis (1)
Ambystoma mexicanum (1)
Mus (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Sus scrofa (1)
Rattus norvegicus (1)
synthetic construct (1)
Sus scrofa domesticus (1)

Repository

ENA (117)
biostudies-arrayexpress (102)
pride (44)
geo (41)
EGA (14)
MetaboLights (9)
jPOST (5)
MetabolomicsWorkbench (3)
iProX (1)
MassIVE (1)

Tissue

Cell culture (14)
Brain (8)
Fibroblast (4)
Primary cell (4)
Blood (3)
Bone marrow (3)
Permanent cell line cell (3)
Blood cell (3)
Blood (3)
Skeletal muscle satellite cell (2)
Cerebrospinal fluid (2)
Diploid cell (2)
Stem cell (2)
Dendritic cell (2)
Central nervous system neuron (1)
Neuroblastoma cell line (1)
MCF-7 cell (1)
Muscle stem cell (1)
Mycelium (1)
Articular chondrocyte (1)
Astrocyte (1)
Malignant cell (1)
Microglial cell (1)
Adipose tissue (1)
Lymph node (1)
Early embryonic cell (1)
Ovary (1)
Heart (1)
Skeletal muscle (1)
Spleen (1)

Disease

Disease free (4)
Malaria (3)
Plasmodium falciparum malaria (2)
Alzheimer's disease (2)
Osteosarcoma (1)
Normal (1)
Bone disease (1)
Viral infectious disease (1)
Tularemia (1)
Neurodegenerative disease (1)
Human cytomegalovirus infection (1)
Neuroblastoma (1)
Osteoarthritis (1)
Brain cancer (1)
Influenza (1)
Malaria (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (16)
Data-dependent acquisition (8)
Mass spectrometry (7)
Data-independent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (6)
SWATH MS (5)
Gel-based experiment (4)
Bottom-up proteomics (4)
ESI (3)
Top-down proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (6)
Illumina NovaSeq 6000 (5)
Illumina HiSeq 2000 (5)
Liquid Chromatography MS - negative - reverse phase (5)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - positive - reverse phase (4)
NextSeq 2000 (3)
Illumina HiSeq 1500 (3)
Illumina HiSeq 2500 (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Sony SH8000S Cell Sorter (1)
Maxwell 16 (1)
MouseWG-6_V2_0_R3_11278593_A (1)
Illumina iScan (1)
Generation III Array Scanner [Amersham] (1)
Illumina Genome Analyzer II (1)
Illumina MiniSeq (1)
Ion Torrent Proton (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Q-Exactive Plus (Thermo Fisher Scientific) LC-MS/MS (1)
MS Imaging - (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (26)
2015 (25)
2024 (18)
2022 (18)
2023 (17)
2014 (16)
2026 (15)
2013 (10)
2020 (9)
2019 (9)
2011 (8)
2021 (7)
2012 (5)
2017 (4)
2018 (4)
2016 (3)
2010 (3)
2008 (2)
2007 (1)
2006 (1)
2004 (1)

CHEBI ID

CHEBI:16680 (3)
CHEBI:16856 (3)
CHEBI:16750 (3)
CHEBI:28044 (3)
CHEBI:28683 (3)
CHEBI:16691 (2)
CHEBI:16765 (2)
CHEBI:16709 (2)
CHEBI:17858 (2)
CHEBI:18186 (2)
CHEBI:25017 (2)
CHEBI:6650 (2)
CHEBI:17015 (2)
CHEBI:30753 (2)
CHEBI:16335 (2)
CHEBI:17509 (2)
CHEBI:18107 (2)
CHEBI:16027 (2)
CHEBI:27732 (2)
CHEBI:27897 (2)
CHEBI:17596 (2)
CHEBI:190813 (1)
CHEBI:16567 (1)
CHEBI:183052 (1)
CHEBI:50677 (1)
CHEBI:136570 (1)
CHEBI:47965 (1)
CHEBI:21615 (1)
CHEBI:52649 (1)
CHEBI:89568 (1)

Metabolite Name

Choline (2)
Citric acid (2)
Malic acid (2)
Xanthine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
Bicyclo-PGE2 (1)
Theronine (1)
Adenosylhomocysteine (1)
2-(2,5-dihydroxy-4-methoxyphenyl)-3,5,6,7-tetrahydroxy-3,4-dihydro-2H-1-benzopyran-4-one; 3-(2,5-dihydroxy-4-methoxyphenyl)-1-(2,3,4,6-tetrahydroxyphenyl)propane-1,2-dione; 3,5,7-trihydroxy-6-methoxy-2-(3,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; 3,5,7-trihydroxy-6-methoxy-2-(2,3,4-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; 3,5,7-trihydroxy-6-methoxy-2-(2,4,5-trihydroxyphenyl)-3,4-dihydro-2H-1-benzopyran-4-one; (1)
N-acetyl-L-2-aminoadipate(2-); (1)
VI2Fuc-nLc6; (1)
3',5'-Diiodo-L-thyronine 4'-O-sulfate; (1)
TG(22:1(13Z)/19:2n6/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); (1)
TG(15:0/22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); TG(15:0/22:4(7Z,10Z,13Z,16Z)/22:4(7Z,10Z,13Z,16Z)); TG(15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)/22:2(13Z,16Z)); TG(22:2(13Z,16Z)/15:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)); TG(22:4(7Z,10Z,13Z,16Z)/15:0/22:4(7Z,10Z,13Z,16Z)); (1)
TG(14:0/15:0/24:0); TG(14:0/24:0/15:0); TG(15:0/14:0/24:0); TG(15:0/16:0/22:0); TG(15:0/18:0/20:0); (1)
Shoyuflavone C; (1)
4-Hydroxycinnamoylagmatine; (1)
Tipranavir; (1)
N-Acetyltryptophan; Methylphenobarbital; Nigellicine; cyclic 6-Hydroxymelatonin; (1)
Sialyllacto-N-tetraose a; Sialyllacto-N-neotetraose c; Sialyllacto-N-tetraose b; LS tetrasaccharide d; Sialyllacto-N-tetraose c; (1)
Ganglioside GD3 (d18:1/12:0); (1)
L-Tryptophan; D-Tryptophan; 3-Hydroxymethylantipyrine; Ethotoin; (Â±)-Tryptophan; (1)
Vinylacetylglycine; Trimethadione; 5-ethyl-5-methyl-2,4-oxazolidinedione; 6-Oxopiperidine-2-carboxylic acid; (1)
Glutamyltryptophan; Tryptophyl-Glutamate; gamma-Glutamyltryptophan; (1)
Norlaudanosoline; Pipermethystine; noroxymorphone; (1)
Ethyl 2-mercaptopropionate; Methyl 3-mercaptobutanoate; Methyl 3-(methylthio)propanoate; Ethyl 2-(methylthio)acetate; Ethyl 3-mercaptopropanoic acid; (1)
Olmesartan; (1)
De-O-methylsterigmatocystin; Aurantricholide B; {3-[2-(3,5-dihydroxyphenyl)ethyl]phenyl}oxidanesulfonic acid; Dihydroresveratrol 3-sulfate; Dihydroresveratrol 4'-sulfate; (1)
1-Isothiocyanato-8-(methylthio)octane; (1)

First Public Date

2024 (23)
2025 (19)
2023 (19)
2026 (14)
2020 (11)
2018 (9)
2022 (6)
2014 (4)
2021 (3)
2019 (3)
2017 (2)
2016 (2)
2015 (1)
2013 (1)

Modification

2x(15)N labeled L-lysine (1)

Study type

ChIP-seq (45)
Transcription profiling by array (21)
RNA-seq of coding RNA (19)
RNA-seq of coding RNA from single cells (4)
MicroRNA profiling by high throughput sequencing (2)
Other (2)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
CUT&RUN (1)

Release Date

2025 (98)
2023 (79)
2024 (75)
2022 (73)
2021 (64)
2020 (55)
2015 (35)
2019 (28)
2017 (22)
2014 (21)
2018 (21)
2011 (16)
2026 (15)
2013 (15)
2010 (11)
2012 (11)
2016 (8)
2008 (5)
2007 (4)
2006 (2)
2009 (2)
2004 (1)

Lab affiliation

Fudan University Shanghai Cancer Center (2)
DZNE Munich / TU Munich (2)
associate professor of neurology Institute for cell engineering Johns hopkins university school of medicine (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) TUM School of Life Sciences Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising (1)
Division of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany & Hopp Children’s Cancer Center at the NCT Heidelberg (KiTZ), 69120 Heidelberg, Germany (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, Parkville, Australia (1)
Director, Institute for Tissue Engineering and Regenerative Medicine (iTERM) Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg Germany (1)
Molecular Biology Department, Princeton University, Princeton, NJ, USA (1)
Proteomics, Institute of Theoretical Medicine, University of Augsburg, 86159 Augsburg, Germany (1)
School of Medicine, Deakin University, Geelong, 3216, Australia (1)
Department of Molecular Genetics and Cell Biology and Ludwig Center for Metastasis Research, The University of Chicago, Chicago IL (1)
Assisstant professor. Graduate College. Rush University Medical Center. (1)
Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA (1)
Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, China (1)
Department of Neurology, Yale School of Medicine, Yale University, new haven CT, USA (1)
Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Australia (1)
Department of Molecular Biology, Faculty of Science Radboud Institute for Molecular Like Sciences, Radboud University Nijmegen, Nijmegen, 6525 GA, The Netherlands (lab head) (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Centre for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, The Netherlands (1)
Queen's University Belfast (1)
Dept. of Biochemistry and Biophysics, Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104 (1)
Laboratory for Biomedical Mass Spectrometry, Newcastle University Biosciences Institute, Newcastle University, England (1)
Senior Research Fellow/Senior Lecturer Division of Cardiovascular Sciences Faculty of Biology, Medicine and Health Deputy Programme Director---MSc in Cardiovascular Health & Disease (Research) The University of Manchester Oxford road, Manchester, United Kingdom, M139PL (1)
MRC Translational Immune Discovery Unit, MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK (1)
IMol, Polish Academy of Sciences, 02-247 Warsaw, Poland (1)
Center for Proteomics and Metabolomics, Leiden University Medical Center (1)
University of Copenhagen Faculty of Health Sciences Centre for Glycomics Department of Cellular and Molecular Medicine Copenhagen Denmark (1)
College of Life Sciences, Northwest Normal University, Lanzhou 730070, China (1)
Medizinisches Proteom-Center (1)
University of Missouri (1)
Max Delbrück Center Robert-Rössle-Straße 10 13125 Berlin, Germany (1)

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Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 1)

Not available

ORGANISM(S): Plasmodium falciparum

ST002106 | MetabolomicsWorkbench

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 3)

Not available

ORGANISM(S): Plasmodium falciparum

ST002108 | MetabolomicsWorkbench

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway (Part 2)

Not available

ORGANISM(S): Plasmodium falciparum

ST002107 | MetabolomicsWorkbench

Genetic and chemical validation of Plasmodium falciparum aminopeptidase PfA-M17 as a drug target in the hemoglobin digestion pathway

Plasmodium falciparum, the causative agent of malaria, continues to remain a global health threat since these parasites are now resistant to all anti-malaria drugs used throughout the world. Accordingly, drugs with novel modes of action are desperately required to combat malaria. P. falciparum paras...

ORGANISM(S): Homo sapiens (Human) Plasmodium falciparum 365.1

2022-09-12 | PXD032358 | Pride

PFA ependymoma cancer study

Sequencing data related the PFA ependymoma study (Michealraj et al., Cell 2020), a lethal glial malignancy of the hindbrain found in babies and toddlers.

EGAS00001004312 | EGA

EZHIP / CXorf67 mimics oncohistones to inhibit PRC2 in PFA ependymoma

PRJNA525839 | ENA

Rhodococcus erythropolis strain:PFA D8-1

Rhodococcus erythropolis strain:PFA D8-1 Genome sequencing and assembly

PRJNA884193 | ENA

Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression

PRJNA801698 | ENA

TULIPs decorate the three-dimensional genome of PFA ependymoma

PRJNA774780 | ENA

Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression

Childhood brain tumor ependymoma remains incurable in approximately 50 percent of cases. No oncogenic mechanism has been firmly established for the commonest ependymoma variant posterior fossa subgroup A (PFA), impeding clinical advances. Uncovering how heterogeneous cell types within the tumor micr...

ORGANISM(S): Homo sapiens

2022-10-13 | GSE195661 | GEO

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