Pham H H - OmicsDI

Show results for

Unknown (1827)
Proteomics (65)
Transcriptomics (35)
Genomics (24)
Metabolomics (3)
Models (2)
Other (1)

Organisms

Andropogon gerardi (61)
Bacteria (61)
Canis lupus familiaris (61)
Cnidaria (61)
Cricetulus griseus (61)
Eukaryota (61)
Fasciola (61)
Hepatitis B virus (61)
Human betaherpesvirus 5 (61)
Madurella mycetomatis (61)
Mesocricetus auratus (61)
Miscanthus x giganteus (61)
Mus musculus (61)
Orthoflavivirus (61)
Panicum virgatum (61)
Platyhelminthes (61)
Pseudomonas aeruginosa AES-1R (61)
Rattus norvegicus (61)
Rattus rattus (61)
Caenorhabditis elegans (22)
Homo sapiens (14)
Mus musculus (8)
Arabidopsis thaliana (5)
Rattus norvegicus (3)
Danio rerio (2)
Daphnia magna (1)
synthetic construct (1)
Oryza sativa Japonica Group (1)
Saccharomyces cerevisiae (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

pride (61)
biostudies-arrayexpress (59)
MassIVE (3)
MetaboLights (2)
BioModels (1)
FAIRDOMHub (1)
GNPS (1)
GPMDB (1)
PeptideAtlas (1)

Tissue

Cell culture (7)
Epithelial cell (6)
Lung (4)
Blood (3)
Kidney (3)
Liver (3)
Ovary (3)
Blood plasma (2)
Brain (2)
Colon (2)
Early embryonic cell (2)
Embryonic stem cell (2)
Endospore (2)
Hepatocyte (2)
Leaf (2)
Pancreas (2)
Others (1)
Adipose tissue (1)
Aortic valve (1)
Astrocyte (1)
Bacterial protein (1)
Blood cell (1)
Bone marrow (1)
Bronchial epithelial cell (1)
Bronchoalveolar lavage (1)
Cerebrospinal fluid (1)
Dendritic cell (1)
Electrically active cell (1)
Embryo (1)
Esophagus (1)

Disease

Colon cancer (4)
COVID-19 (2)
Disease free (2)
Rectum cancer (2)
Tuberculosis (2)
Pulmonary arterial hypertension (1)
Not Available (1)
Anus cancer (1)
Aortic valve (1)
Aortic valve stenosis (1)
Breast cancer (1)
Esophageal cancer (1)
FTDALS1 (1)
Fungal infectious disease (1)
Glioblastoma (1)
Hepatitis C (1)
Hepatocellular carcinoma (1)
Kidney cancer (1)
Melanoma (1)
Neutropenia (1)
Pancreatic cancer (1)
Pancreatic ductal adenocarcinoma (1)
Prostate cancer (1)
Sarcoidosis (1)
Stomach carcinoma (1)
Tongue squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (61)
Shotgun proteomics (31)
Data-dependent acquisition (9)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-independent acquisition (3)
SWATH MS (3)
Top-down proteomics (3)
Mass spectrometry (2)
All-ion fragmentation (2)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (2)
Q Exactive (2)
6530A Q-TOF LC/MS (1)
Instrument (1)
Orbitrap Eclipse (1)
Liquid Chromatography MS - - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
LTQ Orbitrap Elite (1)

Publication Date

2011 (25)
2022 (16)
2024 (9)
2021 (9)
2026 (9)
2025 (8)
2020 (7)
2012 (7)
2010 (7)
2013 (5)
2016 (5)
2023 (5)
2015 (3)
2014 (3)
2019 (3)
2009 (2)
2006 (2)
2005 (2)
2007 (1)
2017 (1)

UNIPROT ID/AC

A0A024RC46 (1)
A0A075B6P5 (1)
A0A087WT59 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WWA5 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A087X232 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0B4J1V0 (1)
A0M8Q6 (1)
A0N5G4 (1)
A0N5G5 (1)
A0N7I9 (1)
A0N7J6 (1)
A2BFH1 (1)
A2IPH7 (1)
A2IPI2 (1)
A2IPI4 (1)
A2IPI5 (1)
A2IPI6 (1)
A2J422 (1)
A2J423 (1)
A2JA16 (1)
A2JA19 (1)
A2N011 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)
CHEBI:46502 (1)
CHEBI:36272 (1)
CHEBI:30518 (1)
CHEBI:36271 (1)
CHEBI:26894 (1)
CHEBI:9474 (1)
CHEBI:45729 (1)
CHEBI:27902 (1)
CHEBI:71392 (1)
CHEBI:77932 (1)

Metabolite Name

KDPG (1)
FBP (1)
6PG (1)
F1P (1)
F6P (1)
S7P (1)
G6P (1)
DHAP (1)
PEP (1)
Malate (1)
Fumarate (1)
ATP (1)
AMP (1)
Succinate (1)

IsPrivate

False (1)

Submitter Keywords

FROG (1)

Modelling Approach

Constraint-based model (1)

Study type

ChIP-seq (23)
Transcription profiling by array (20)
Unknown experiment type (6)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
One-color microarray (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of coding RNA (1)

Release Date

2021 (243)
2025 (230)
2024 (229)
2023 (207)
2022 (203)
2020 (150)
2019 (98)
2018 (85)
2016 (76)
2017 (70)
2015 (53)
2026 (48)
2011 (47)
2014 (38)
2013 (27)
2012 (26)
2010 (18)
2009 (13)
2008 (8)
2006 (6)
2007 (4)
2005 (4)
2004 (1)
2003 (1)
2002 (1)

Lab affiliation

Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (8)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (3)
Daegu Catholic University School of Medicine (2)
Institute of Molecular Biosciences, University of Graz, Graz, 8010, Austria (2)
Assistant professor, School of Biological Sciences, Seoul National University. (1)
Bowel Cancer and Biomarker Lab Kolling Institute The University of Sydney (1)
Brigham and Women's Hopsital Harvard Medical School (1)
Brigham and Women's Hospital, Harvard Medical School (1)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (1)
Cell Signaling and Chemical Biology, Research Unit Signaling and Translation, Helmholtz Zentrum München, Neuherberg, Germany; Department of Biological Sciences, Department of Chemistry, Herbert Irving Comprehensive Cancer Center, Irving Institute for Cancer Dynamics, Columbia University, New York, NY, USA. (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Department of Chemical and Biological Engineering, The University of Sheffield, Mappin Street, Sheffield, S1 3JD, United Kingdom (1)
Department of Experimental Medicine, Section of Physiology and Biochemistry (1)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany (1)
Department of Life Sciences, Korea University, Seoul 02841, Republic of Korea (1)
Department of Microbiology and Cell Biology, Montana State Univeristy (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Molecular and Cellular Biochemistry, Indiana University, Bloomington, IN, 47405 (1)
Dept. Oncology Pathology, Karolinska Institutet, and ScilifeLab, Stockholm, Sweden (1)
Director - Analytical Services at the CCRC (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)
Helmholtz Zentrum München, Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Ingolstädter Landstr. 1, 85764 Neuherberg, Germany (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 France (1)
Institute of Diabetes and Regeneration Research, Helmholtz Center Munich, Neuherberg, Germany; School of Medicine, Technical University of Munich, Munich, Germany; German Center for Diabetes Research (DZD), Neuherberg, Germany. (1)
Institute of Lung Health and Immunity and Comprehensive Pneumology Center with the CPC-M BioArchive, Helmholtz Zentrum München, Member of the German Center of Lung Research (DZL) - München (Germany) (1)
Institute of Lung Health and Immunity, and Comprehensive Pneumology Center with the CPC-M bioArchive, Ludwig-Maximilians-Universität München and Helmholtz Zentrum München, Munich, Germany, Member of the German Center for Lung Research (DZL). (1)
Institute of Structural Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, 85764, Neuherberg, Germany; Institute of Pharmaceutical Biotechnology, 89081, Ulm University, Ulm, Germany. (1)
Nutritional Sciences, Division of Agriculture, Life and Veterinary Sciences, University of Arizona, Tucson, Arizona 85721, USA (1)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Center, Amsterdam, The Netherlands (1)
Physiological Genomics, Biomedical Center, Ludwig Maximilians Universitaet Munich, Germany; Institute for Stem Cell Research, Helmholtz Center Munich, Neuherberg, Germany (1)