Pham K K - OmicsDI

Show results for

Unknown (1674)
Proteomics (49)
Genomics (25)
Transcriptomics (18)
Models (2)
Metabolomics (2)
Other (1)

Organisms

Chlamydomonas reinhardtii (42)
Enterococcus mundtii CRL35 (42)
Oncorhynchus tshawytscha (42)
Pseudomonas canadensis (42)
Human alphaherpesvirus 1 strain 17 (42)
Marchantia polymorpha subsp. ruderalis (42)
Methylocystis sp. (42)
Exiguobacterium sp. SH31 (42)
Amaranthus tricolor (42)
Porites pukoensis (42)
Porphyromonas gingivalis W83 (42)
Human betaherpesvirus 5 (42)
Bothrops insularis (42)
Bothrops jararaca (42)
Bothrops jararacussu (42)
Bothrops cotiara (42)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (42)
Severe acute respiratory syndrome coronavirus 2 (42)
Bacillus spizizenii ATCC 6633 = JCM 2499 (42)
Dinosauria (42)
Pseudomonas [fluorescens] SBW25 (42)
Fasciola hepatica (42)
Caenorhabditis elegans (22)
Homo sapiens (8)
Mus musculus (5)
Arabidopsis thaliana (4)
Oryza sativa (1)
Saccharomyces cerevisiae (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (43)
pride (42)
PAXDB (3)
MassIVE (2)
MetaboLights (2)
PeptideAtlas (2)
BioModels (1)
FAIRDOMHub (1)
GPMDB (1)

Tissue

Cell culture (6)
Lung (5)
Epithelial cell (5)
Early embryonic cell (3)
Blood (3)
Peripheral blood mononuclear cell (2)
Leukocyte (2)
Fibroblast (2)
Brain (2)
Blood plasma (2)
Embryonic stem cell (2)
Leaf (2)
Liver (2)
Valve (1)
HT-1080 cell (1)
Nucleus accumbens (1)
Germ cell (1)
Aortic valve (1)
Egg (1)
Neutrophil (1)
Photosynthetic cell (1)
Epithelial cell of lung (1)
Adipose tissue (1)
Bronchoalveolar lavage (1)
Venom (1)
Blood platelet (1)
Bone marrow (1)
Blood serum (1)
Blood cell (1)
Stem cell (1)

Disease

COVID-19 (2)
Not Available (1)
Aortic valve (1)
Neutropenia (1)
Sarcoidosis (1)
Aortic valve stenosis (1)
Hepatitis C (1)
Non-small cell lung carcinoma (1)
Tuberculosis (1)
Breast cancer (1)
Lung cancer (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (42)
Shotgun proteomics (23)
Bottom-up proteomics (9)
Data-dependent acquisition (5)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-independent acquisition (3)
Mass spectrometry (2)
All-ion fragmentation (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive (2)
LTQ FT (2)
Illumina HiSeq 2000 (1)
Instrument (1)
Liquid Chromatography MS - - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2011 (23)
2022 (12)
2013 (8)
2015 (6)
2025 (6)
2021 (6)
2012 (5)
2010 (5)
2026 (5)
2024 (4)
2020 (3)
2016 (3)
2017 (3)
2023 (2)
2009 (1)
2006 (1)
2005 (1)
2019 (1)
2018 (1)

UNIPROT ID/AC

CAMT_MYCTU (3)
O06406_MYCTU (3)
Y2632_MYCTU (3)
O06238_MYCTU (3)
I6YA21_MYCTU (3)
P71738_MYCTU (3)
FAA28_MYCTU (3)
GCSP_MYCTU (3)
P96874_MYCTU (3)
P95072_MYCTU (3)
I6XFB7_MYCTU (3)
O53319_MYCTU (3)
I6XG43_MYCTU (3)
BFRB_MYCTU (3)
RL25_MYCTU (3)
AHPE_MYCTU (3)
O05859_MYCTU (3)
P95229_MYCTU (3)
O05592_MYCTU (3)
I6YAW3_MYCTU (3)
GLTB_MYCTU (3)
Q6MX34_MYCTU (3)
PSTS3_MYCTU (3)
I6Y946_MYCTU (3)
RIR2B_MYCTU (3)
I6Y8S6_MYCTU (3)
RL24_MYCTU (3)
ECCA1_MYCTU (3)
Y2910_MYCTU (3)
I6YC91_MYCTU (3)

CHEBI ID

CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)
CHEBI:46502 (1)
CHEBI:36272 (1)
CHEBI:30518 (1)
CHEBI:36271 (1)
CHEBI:26894 (1)
CHEBI:9474 (1)
CHEBI:45729 (1)
CHEBI:27902 (1)
CHEBI:71392 (1)
CHEBI:77932 (1)

Metabolite Name

KDPG (1)
FBP (1)
6PG (1)
F1P (1)
F6P (1)
S7P (1)
PEP (1)
G6P (1)
Fumarate (1)
Succinate (1)
Malate (1)
DHAP (1)
ATP (1)
AMP (1)

IsPrivate

False (1)

Submitter Keywords

FROG (1)

Modelling Approach

Constraint-based model (1)

Study type

ChIP-seq (25)
Transcription profiling by array (7)
Unknown experiment type (5)
RNA-seq of coding RNA (3)
One-color microarray (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (223)
2021 (216)
2022 (216)
2024 (203)
2023 (195)
2020 (134)
2019 (79)
2018 (64)
2017 (55)
2016 (49)
2015 (49)
2014 (47)
2011 (44)
2026 (43)
2013 (25)
2012 (24)
2010 (21)
2009 (9)
2006 (6)
2005 (5)
2008 (4)
2003 (2)
2007 (1)
2004 (1)
2002 (1)
2001 (1)

Lab affiliation

Research Unit Protein Science, Helmholtz Center Munich, German Research Center for Environmental Health GmbH, Germany (2)
Infectious Disease Immunology (1)
Nantes Université, CNRS, INSERM, l’institut du thorax, 44000 Nantes, France (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Department of Chemical and Biological Engineering, the University of Sheffield, Mappin Street, Sheffield, S1 3JD, United Kingdom (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Professor, Department of Cellular and Molecular Pharmacology (1)
Institute for Cardiovascular Physiology, Faculty of Medicine, Goethe-University; Frankfurt am Main, Germany (1)
Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou, China (1)
Department of Pediatric Respiratory Medicine, Immunology and Critical Care Medicine, Charite ‐ Universitatsmedizin, Germany; German Center for Lung Research (DZL), Associated Partner Site, Germany; Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Germa (1)
Institute of Structural Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, 85764, Neuherberg, Germany; Institute of Pharmaceutical Biotechnology, 89081, Ulm University, Ulm, Germany. (1)
Metabolomics and Proteomics Core (MPC), Helmholtz Zentrum München GmbH German Research Center for Environmental Health, Munich, Germany (1)
UC Proteomics Laboratory, Department of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, Ohio, Unite States (1)
Institute for Diabetes and Cancer, Helmholtz Munich, Neuherberg, Germany; Joint Heidelberg-IDC Translational Diabetes Program, Inner Medicine 1, Heidelberg University Hospital, Heidelberg, Germany; German Center for Diabetes Research (DZD), and German Center for Cardiovascular Disease (DZHK), Neuherberg, Germany; Chair Molecular Metabolic Control, Technical University Munich, Germany (1)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany (1)
Maynooth University Department of Biology Maynooth University, Maynooth, Co. Kildare, Ireland. (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Brigham and Women's Hopsital Harvard Medical School (1)
Susanne Gabrielsson Associate Professor Experimental Immunology Karolinska Institutet Dept. of Medicine, Translational Immunology Unit KS L2:04, 17 176 Stockholm Sweden NOTE : the proteomic data was produced at Turku University/Åbo Akademi Turku Centre for Biotechnology. Directed by Professor Riitta Lahesmaa http://www.btk.fi/home/main/ http://www.btk.fi/proteomics/front-page/ (1)
Institute of Diabetes and Regeneration Research, Helmholtz Center Munich, Neuherberg, Germany; School of Medicine, Technical University of Munich, Munich, Germany; German Center for Diabetes Research (DZD), Neuherberg, Germany. (1)
Cell Signaling and Chemical Biology, Research Unit Signaling and Translation, Helmholtz Zentrum München, Neuherberg, Germany; Department of Biological Sciences, Department of Chemistry, Herbert Irving Comprehensive Cancer Center, Irving Institute for Cancer Dynamics, Columbia University, New York, NY, USA. (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, 85764 Neuherberg, Germany (1)
The Drug Discovery Lab, Mary S. Easton Center for Alzheimer’s Disease Research, Department of Neurology, David Geffen School of Medicine, 710 Westwood Plaza, University of California Los Angeles, Los Angeles, CA 90095, USA (1)
Brigham and Women's Hospital, Harvard Medical School (1)
Institute of Lung Health and Immunity and Comprehensive Pneumology Center with the CPC-M BioArchive, Helmholtz Zentrum München, Member of the German Center of Lung Research (DZL) - München (Germany) (1)
Emmy-Noether Research Group Cellular Proteomics and Metabolic Signaling Institute for Diabetes and Obesity Helmholtz Diabetes Center Germany (1)
Dept. Oncology Pathology, Karolinska Institutet, and ScilifeLab, Stockholm, Sweden (1)
Core Facilities – Clinical Proteomics and Metabolomics, IRCCS Istituto G. Gaslini, Genova, Italy (1)
Molecular Genetics, University of Toronto Hospital for Sick Children, Toronto, Canada (1)
Research Unit Environmental Simulation, Institute of Biochemical Plant Pathology, Helmholtz Zentrum München, Ingolstädter Landstr.1 85764 Neuherberg, Germany (1)