Phillips B B - OmicsDI

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Unknown (2878)
Transcriptomics (136)
Proteomics (56)
Genomics (44)
Metabolomics (9)
Models (1)
Genomic (1)
Multiomics (1)
Other (1)

Organisms

Homo sapiens (112)
Mus musculus (44)
Rattus norvegicus (15)
Arabidopsis thaliana (8)
Yersinia pestis (4)
Zea mays (4)
Caenorhabditis elegans (4)
Triticum aestivum (3)
Plasmodium falciparum 3D7 (3)
Caenorhabditis remanei (2)
Plasmodium falciparum Dd2 (2)
synthetic construct (2)
Hordeum vulgare (2)
Solanum lycopersicum (2)
Escherichia coli (2)
Calicophoron daubneyi (2)
Equus caballus (2)
Fasciola hepatica (2)
Mammalia (1)
Synechocystis sp. PCC 6803 (1)
Salvia hispanica (1)
Gossypium hirsutum (1)
Aspergillus nidulans (1)
Lolium perenne (1)
Picea abies (1)
Oryza sativa (1)
Pseudomonas aeruginosa PAO1 (1)
Gallus gallus (1)
Solanum tuberosum (1)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)

Organisms

Zea mays (2)
Solanum lycopersicum (1)

Repository

biostudies-arrayexpress (136)
pride (53)
EGA (38)
MetaboLights (8)
ENA (4)
MassIVE (3)
geo (2)
BioModels (1)
dbGaP (1)
GNPS (1)
jPOST (1)

Tissue

Lung (9)
Brain (4)
Cell culture (4)
Liver (3)
Whole body (3)
Blood plasma (2)
Cell suspension culture (2)
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Nasal mucosa (2)
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Urine (2)
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Extracellular vesicle (1)
Fibroblast (1)
Glial cell (1)
Glioblastoma multiforme cancer stem cell (1)
Placenta (1)
Primary cell (1)
Prokaryotic cell (1)
Stem cell (1)
T cell (1)

Disease

Breast cancer (2)
Diffuse midline glioma (2)
Glioblastoma (2)
Astrocytoma (1)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Colorectal cancer recurrence-free (1)
Squamous cell carcinoma (1)
Barrett's esophagus (1)
Normal (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Idiopathic pulmonary fibrosis (1)
Leishmaniasis (1)
Parasitic helminthiasis infectious disease (1)
Parasitic infectious disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (32)
Gel-based experiment (9)
Mass spectrometry (8)
Bottom-up proteomics (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
SWATH MS (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina HiSeq 2500 (3)
Affymetrix GeneChip Scanner 3000 7G (2)
Illumina Genome Analyzer IIx (2)
Scanning hardware (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Agilent DNA Microarray Scanner G2565CA (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2000 (1)
Impact II (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
Bruker maXis ESI Quadrupole TOF (1)
Orbitrap Exploris 480 (1)
2D Gas Chromatography MS – Positive (1)
Agilent 6890 GC/5973N MSD (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Q Exactive (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2013 (29)
2008 (19)
2024 (13)
2021 (13)
2014 (13)
2010 (13)
2017 (12)
2015 (11)
2012 (11)
2023 (10)
2007 (10)
2020 (8)
2019 (7)
2022 (6)
2011 (6)
2025 (6)
2016 (5)
2006 (4)
2018 (4)
2005 (2)
2026 (2)
2009 (1)

CHEBI ID

CHEBI:15428 (5)
CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16865 (4)
CHEBI:17154 (4)
CHEBI:17568 (4)
CHEBI:17596 (4)
CHEBI:17802 (4)
CHEBI:17822 (4)
CHEBI:18012 (4)
CHEBI:18089 (4)
CHEBI:18237 (4)
CHEBI:18257 (4)
CHEBI:25094 (4)
CHEBI:28044 (4)
CHEBI:30915 (4)
CHEBI:6650 (4)
CHEBI:7916 (4)
CHEBI:15354 (3)
CHEBI:15611 (3)
CHEBI:15724 (3)
CHEBI:15756 (3)
CHEBI:15963 (3)
CHEBI:16000 (3)
CHEBI:16040 (3)
CHEBI:16113 (3)
CHEBI:16235 (3)
CHEBI:16344 (3)

Metabolite Name

Ethanolamine (3)
Glycine (3)
Pantothenic acid (3)
1-Methylhistidine (2)
Cholesterol (2)
Citric acid (2)
Fumaric acid (2)
Galactonic acid (2)
Hexadecanoic acid (2)
Hippuric acid (2)
Hypoxanthine (2)
Indole (2)
L-Valine (2)
Malic acid (2)
Myo-inositol (2)
N-acetylcitrulline (2)
Niacinamide (2)
Oxalic acid (2)
P-cresol sulfate (2)
Phenylalanine (2)
Phosphoric acid (2)
Ribitol (2)
Ribonic acid (2)
Serine (2)
Succinic acid (2)
Taurine (2)
()-2-(2-Furanyl)pyrrolidine (1)
(+)-2,3-Dihydro-3-methyl-1H-pyrrole (1)
(1S,2S,4R,8S)-p-Menthane-1,2,8,9-tetrol 2-glucoside (1)
(2E)-Decenoyl-ACP (1)

IsPrivate

False (1)

First Public Date

2014 (3)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

-17.026549 (1)
-18.010565 (1)
15.994915 (1)
42.010565 (1)
57.021464 (1)

Study type

Transcription profiling by array (105)
RNA-seq of coding RNA (11)
Animal - One-color microarray (4)
Comparative genomic hybridization by array (4)
Unknown experiment type (2)
MicroRNA profiling by array (2)
Methylation profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by SAGE (1)
Other (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (317)
2023 (281)
2024 (269)
2022 (268)
2025 (242)
2020 (229)
2019 (189)
2018 (189)
2017 (150)
2015 (146)
2016 (125)
2014 (118)
2013 (105)
2012 (84)
2010 (64)
2011 (52)
2026 (47)
2008 (38)
2009 (34)
2007 (21)
2005 (14)
2006 (11)
2004 (7)
2001 (4)
2003 (3)
2002 (2)
1999 (2)
2000 (1)
1998 (1)
1995 (1)

Lab affiliation

Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (3)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, Texas 75390, USA (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (part of Philip Morris International group of companies) (2)
University of Southern California (2)
"Philip Morris R&D, Neuchatel, Switzerland" (1)
Aberystwyth University (1)
Animal Medicine Department, University of Extremadura, 10003 Cáceres, Spain (1)
Brain Tumor Translational Targets B067 German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany Phone: +49 6221 42-4635 (1)
Brain tumor translational targets German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany (1)
CCDC CBC (1)
CECAD Institut - University of Cologne Joseph-Stelzmann-Strasse 26 50931 Cologne Germany (1)
Cancer Institute, University College London (1)
Cell Biology and Physiology, The University of North Carolina at Chapel Hill (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, University of Texas Southwestern Medical Center (1)
Department of Biological Sciences, University of Southern California, Los Angeles CA (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand (1)
Departments of Neuroscience and Psychiatry, The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Dr. Robert Ahrends Group leader lipidomics Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany (1)
European Institute of Oncology, Milan, Italy (1)
Functional Proteome Analysis, German Cancer Research Center(DKFZ) (1)
Group Leader; Honorary Senior Fellow: Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia (1)
IBERS, Aberystwyth University (1)
Institute for Glycomics, Griffith University (1)
Institute for Glycomics, Griffith University, Gold Coast, Queensland, 4222, Australia (1)

Tags

xref:PubMed:24494230 (2)
xref:PubMed:18719398 (1)
xref:PubMed:33292867 (1)

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UV-B regulation of microRNAs in maize

Differential expression of microRNAs was studied in maize leaves after an 8-h-exposure under UV-B light. As a control, plants were kept in the greenhouse in the absence of UV-B 4-week maize plants were grown in the greenhouse in the absence of UV-B. Then, they were divided in two groups. One group w...

ORGANISM(S): Zea mays

2013-10-31 | E-GEOD-19768 | biostudies-arrayexpress

Rearrangement of CRLF2 in B-progenitor and Down syndrome associated acute lymphoblastic leukemia

Chromosomal aneuploidy and translocations are hallmarks of acute lymphoblastic leukemia (ALL), but many patients lack a recurring chromosomal alteration. Here we report a recurring interstitial deletion of the pseudoautosomal region 1 of chromosomes X and Y in B-progenitor ALL that results in the ex...

ORGANISM(S): Homo sapiens

2009-10-18 | E-GEOD-16724 | biostudies-arrayexpress

GNPS Burkholderia thailandensis and Bacillus spp. Monocultures and B. thailandensis + Bacillus velezensis co-cultures

Extraction samples of Bacillus spp. and B. thailandensis in mono and co-culture. Extracts were analyzed with LC-MS/MS to identify compounds detected within the aforementioned samples. Included are extracts of B. thailandensis monocultures, several Bacillus spp. monocultures, and co-cultures of B. t...

ORGANISM(S): Bacillus Subtilis (ncbitaxon:1423) Paenibacillus Lactis (ncbitaxon:228574) Bacillus Nealsonii (ncbitaxon:115979) Virgibacillus Pantothenticus (ncbitaxon:1473) Burkholderia Thailandensis E264 (ncbitaxon:271848) Bacillus Clausii (ncbitaxon:79880) Bacillus Velezensis (ncbitaxon:492670) Bacillus Licheniformis (ncbitaxon:1402) Bacillus Simplex (ncbitaxon:1478) Bacillus Megaterium (ncbitaxon:1404) Brevibacillus Borstelensis (ncbitaxon:45462)

2022-12-27 | MSV000090970 | GNPS

Microarray comparison of RNAi chc101 and mbd101 transgenic plants and non transgenic siblings after UV-B exposure

Mutant maize lines expressing RNAi gene silencing constructs directed to two distinct classes of chromatin associated proteins show heightened sensitivity to UV-B including sunburned necrosis and down regulation of chromatin genes (Casati and Walbot, 2006). We have available transgenic maize express...

ORGANISM(S): Zea mays

2008-12-31 | GSE10400 | GEO

Functional analysis of the Staphylococcus aureus collagen adhesin B domain.

Not available

S-EPMC96678 | biostudies-literature

Prediabetes Induced by a Single Autoimmune B Cell Clone.

Not available

S-EPMC7314986 | biostudies-literature

A total synthesis of norhalichondrin B.

Not available

S-EPMC2901598 | biostudies-literature

Isolation and characterization of strains CVO and FWKO B, two novel nitrate-reducing, sulfide-oxidizing bacteria isolated from oil field brine.