Phillips S S - OmicsDI

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Unknown (4384)
Transcriptomics (114)
Proteomics (62)
Genomics (29)
Metabolomics (9)
Models (1)
Genomic (1)
Multiomics (1)
Other (1)

Organisms

Homo sapiens (89)
Mus musculus (39)
Rattus norvegicus (16)
Arabidopsis thaliana (7)
Yersinia pestis (4)
Zea mays (3)
Escherichia coli (3)
Fasciola hepatica (3)
Plasmodium falciparum Dd2 (2)
synthetic construct (2)
Hordeum vulgare (2)
Equus caballus (2)
Plasmodium falciparum 3D7 (2)
Arabidopsis (1)
Caenorhabditis remanei (1)
Synechocystis sp. PCC 6803 (1)
Gossypium hirsutum (1)
Aspergillus nidulans (1)
Lolium perenne (1)
Picea abies (1)
Pseudomonas aeruginosa PAO1 (1)
Solanum lycopersicum (1)
Triticum aestivum (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Xenopus laevis (1)
Actinobacillus pleuropneumoniae serovar 3 str. JL03 (1)
Actinobacillus pleuropneumoniae serovar 7 str. AP76 (1)
Aepyornis sp. (1)

Organisms

Haematococcus lacustris (1)

Repository

biostudies-arrayexpress (116)
pride (54)
EGA (24)
MassIVE (7)
MetaboLights (7)
ENA (3)
GNPS (2)
BioModels (1)
dbGaP (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Brain (10)
Lung (8)
Liver (3)
Sperm (3)
Stem cell (3)
Cell culture (2)
Cell suspension culture (2)
Nasal mucosa (2)
Blood plasma (1)
Culture medium (1)
Eggshell (1)
Epithelial cell (1)
Erythrocyte (1)
Fibroblast (1)
Glioblastoma multiforme cancer stem cell (1)
Layer of retina (1)
Meningioma cell (1)
Placenta (1)
Prokaryotic cell (1)
Prostate gland (1)
Retina (1)
Testis (1)
Urine (1)
Whole body (1)

Disease

Alzheimer's disease (6)
Brain glioblastoma multiforme (2)
Disease free (2)
Glioblastoma (2)
Astrocytoma (1)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Colorectal cancer recurrence-free (1)
Squamous cell carcinoma (1)
Barrett's esophagus (1)
Normal (1)
Brain cancer (1)
Diffuse midline glioma (1)
Fascioliasis (1)
Leishmaniasis (1)
Prostate adenocarcinoma (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (54)
Shotgun proteomics (37)
Gel-based experiment (8)
Mass spectrometry (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Bottom-up proteomics (4)
Data-dependent acquisition (2)
HDMSE (2)
SWATH MS (2)
Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Mass spectrometry assay (1)

Instrument Platform

Orbitrap Fusion Lumos (4)
Affymetrix GeneChip Scanner 3000 7G (2)
Scanning hardware (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Agilent DNA Microarray Scanner G2565CA (1)
Illumina Genome Analyzer IIx (1)
418 [Affymetrix] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 2000 (1)
Impact II (1)
Synapt XS (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
Bruker maXis ESI Quadrupole TOF (1)
Orbitrap Exploris 480 (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Q Exactive (1)
QTRAP 5500 (Applied Biosystems) (1)
QTRAP 6500 (Applied Biosystems) (1)

Publication Date

2013 (22)
2019 (13)
2008 (13)
2007 (13)
2017 (12)
2024 (11)
2023 (11)
2021 (11)
2015 (11)
2014 (10)
2022 (7)
2020 (7)
2018 (7)
2010 (7)
2016 (6)
2012 (5)
2011 (5)
2006 (4)
2026 (4)
2025 (3)
2009 (2)
2005 (2)

UNIPROT ID/AC

Q9LQT8 (1)
Q9MAA7 (1)

CHEBI ID

CHEBI:15741 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16865 (4)
CHEBI:17154 (4)
CHEBI:17568 (4)
CHEBI:17596 (4)
CHEBI:17802 (4)
CHEBI:15354 (3)
CHEBI:15428 (3)
CHEBI:15724 (3)
CHEBI:15756 (3)
CHEBI:15891 (3)
CHEBI:16040 (3)
CHEBI:16113 (3)
CHEBI:16235 (3)
CHEBI:16530 (3)
CHEBI:16551 (3)
CHEBI:16566 (3)
CHEBI:16750 (3)
CHEBI:17368 (3)
CHEBI:17562 (3)
CHEBI:17712 (3)
CHEBI:17748 (3)
CHEBI:17821 (3)
CHEBI:29590 (1)
CHEBI:29605 (1)
CHEBI:30088 (1)
CHEBI:32902 (1)
CHEBI:32906 (1)

Metabolite Name

Cholesterol (2)
Glycine (2)
Hypoxanthine (2)
L-Valine (2)
N1-Methyl-2-pyridone-5-carboxamide (2)
Niacinamide (2)
P-cresol sulfate (2)
Pantothenic acid (2)
Phenylalanine (2)
()-2-(2-Furanyl)pyrrolidine (1)
(+)-2,3-Dihydro-3-methyl-1H-pyrrole (1)
(1S,2S,4R,8S)-p-Menthane-1,2,8,9-tetrol 2-glucoside (1)
(2E)-Decenoyl-ACP (1)
(2R)-2-Hydroxy-2-methylbutanenitrile (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(3beta,22R,23R,24S)-3,22,23-Trihydroxystigmastan-6-one (1)
(3beta,4alpha,5alpha,23E)-4-Methylergosta-7,23-dien-3-ol (1)
(3beta,4beta,5alpha)-4-Methylergosta-7,24(28)-dien-3-ol (1)
(3beta,5alpha,6beta,22E,24R)-23-Methylergosta-7,22-diene-3,5,6-triol (1)
(3beta,5alpha,6beta,7alpha,22E,24R)-Ergosta-8,22-diene-3,5,6,7-tetrol (1)
(3beta,5alpha,6beta,9alpha,22E,24R)-23-Methylergosta-7,22-diene-3,5,6,9-tetrol (1)
(7Z,10Z)-hexadecadienoylcarnitine (1)
(9Z,12Z)-3-hydroxyhexadecadienoylcarnitine (1)
(E)-5-(3,4,5,6-Tetrahydro-3-pyridylidenemethyl)-2-furanmethanol (1)
(R)-2-Nitro-p-mentha-1,5-diene (1)
(R)-N-Methylsalsolinol (1)
1,11-Undecanedicarboxylic acid (1)
1,2,3,4,5,6-Hexahydro-5-methyl-7H-cyclopenta[b]pyridin-7-one (1)
1,2,3,4,5,6-Hexahydro-7H-cyclopenta[b]pyridin-7-one (1)
1,2,4-triazines (1)

First Public Date

2026 (1)
2021 (1)
2020 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Division of Cardiovascular Sciences, School of Medical Science, Faculty of Biology, Medicine and Health, The University of Manchester (4)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (3)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 NeuchÃƒÂ¢tel, Switzerland (part of Philip Morris International group of companies) (2)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (part of Philip Morris International group of companies) (2)
"Philip Morris R&D, Neuchatel, Switzerland" (1)
Animal Medicine Department, University of Extremadura, 10003 Cáceres, Spain (1)
Babraham Institute, UK (1)
Brain Tumor Translational Targets B067 German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany Phone: +49 6221 42-4635 (1)
Brain tumor translational targets German Cancer Research Center (DKFZ) Im Neuenheimer Feld 580 69120 Heidelberg Germany (1)
CECAD Institut - University of Cologne Joseph-Stelzmann-Strasse 26 50931 Cologne Germany (1)
Cancer Institute, University College London (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, University of Texas Southwestern Medical Center (1)
Department of Biochemistry, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, Texas 75390, USA (1)
Department of Chemistry, Oregon State University (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands (1)
Department of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand (1)
Departments of Neuroscience and Psychiatry, The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Division of Cardiovascular Science, School of Medical Sciences, Faculty of Biology Medicine and Health, The University of Manchester (1)
Division of Cardiovascular Sciences, School of Medical Sciences, Faculty of Biology, Medicine and Health, The University of Manchester (1)
Eberhard Karls University Tübingen, Institute for Ophthalmic Research (1)
Epigenetics and Stem Cell Biology Laboratory; National Institute of Environmental Health Sciences; National Institutes of Health (1)
Functional Proteome Analysis, German Cancer Research Center(DKFZ) (1)
Group Leader; Honorary Senior Fellow: Sir Peter MacCallum Department of Oncology, University of Melbourne, Australia (1)
Institute for Glycomics, Griffith University (1)
Institute for Glycomics, Griffith University, Gold Coast, Queensland, 4222, Australia (1)
Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Wales UK (1)

IsPrivate

False (1)

Modification

Not available (1)

Study type

Transcription profiling by array (94)
RNA-seq of coding RNA (7)
Animal - One-color microarray (4)
Comparative genomic hybridization by array (3)
Unknown experiment type (2)
MicroRNA profiling by array (2)
ChIP-chip by SNP array (1)
Transcription profiling by SAGE (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (465)
2021 (447)
2023 (415)
2025 (413)
2024 (384)
2020 (359)
2019 (276)
2018 (276)
2017 (246)
2016 (201)
2015 (200)
2014 (170)
2013 (120)
2012 (96)
2010 (85)
2011 (84)
2026 (73)
2009 (48)
2008 (45)
2007 (29)
2006 (18)
2005 (14)
2004 (8)
2000 (7)
2003 (6)
2001 (6)
2002 (5)
1999 (2)
1998 (2)

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Transcription profiling of S. cerevisiae wild type and fks1 strains exposed to glucosamine

We did transcription profiling on the effect of glucosamine in Saccharomyces cerevisiae using Research Genetics strains BY4741 (wild type) and 5251 (fks1). Yeast cells exposed to glucosamine in YPD growth medium show a significant increase in chitin content in the lateral cell wall. Likewise, cell w...

ORGANISM(S): Saccharomyces cerevisiae

2007-07-07 | E-GEOD-441 | biostudies-arrayexpress

Multiple unique Cryptosporidium isolates from three species of ground squirrels (Spermophilus beecheyi, S. beldingi, and S. lateralis) in California.

Not available

S-EPMC3008248 | biostudies-literature

S-carboxymethylcysteine in the treatment of glue ear: quantitative systematic review.

Not available

S-EPMC57002 | biostudies-literature

Gene expression changes induced by Benzo[a]pyrene (BaP) in human breast carcinoma cell line MCF-7 in different phases of the cell cycle

Benzo[a]pyrene (BaP) is a widespread environmental genotoxic carcinogen that damages DNA by forming adducts. This damage with along the activation of the aryl hydrocarbon receptor (AHR) induces complex transcriptional responses in cells. To investigate whether human cells are more susceptible to BaP...

ORGANISM(S): Homo sapiens

2012-02-02 | E-GEOD-26917 | biostudies-arrayexpress

Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae.

Not available

S-EPMC2856316 | biostudies-literature

Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803

The unicellular cyanobacterium Synechocystis sp. PCC 6803 is a model system for studying biochemistry, genetics and molecular biology of photobiological processes. Despite its importance in basic and applied research, the genome-wide picture of transcriptional regulation in this bacterium is limited...

ORGANISM(S): Synechocystis sp. PCC 6803

2008-07-24 | E-GEOD-11970 | biostudies-arrayexpress

Species-Selective Pyrimidineamine Inhibitors of Trypanosoma brucei S-Adenosylmethionine Decarboxylase.

Not available

S-EPMC5965259 | biostudies-literature

A ubiquitous spectrolaminar motif across independent studies, including Mackey et al.'s own data.

Not available

S-EPMC12247776 | biostudies-literature

Product feedback regulation implicated in translational control of the Trypanosoma brucei S-adenosylmethionine decarboxylase regulatory subunit prozyme.

Not available

S-EPMC3771639 | biostudies-literature

Fast-Killing Tyrosine Amide ((S)-SW228703) with Blood- and Liver-Stage Antimalarial Activity Associated with the Cyclic Amine Resistance Locus (PfCARL).