Pierce Jan J - OmicsDI

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Unknown (150)
Proteomics (45)
Metabolomics (2)
Transcriptomics (1)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (45)
Andropogon gerardi (45)
Bacteria (45)
Bartonella quintana JK 31 (45)
Burkholderia ubonensis MSMB22 (45)
Canis lupus familiaris (45)
Cnidaria (45)
Ectopseudomonas oleovorans CECT 5344 (45)
Ensifer adhaerens (45)
Halictus scabiosae (45)
Human immunodeficiency virus 1 (45)
Mesocricetus auratus (45)
Miscanthus x giganteus (45)
Morchella importuna (45)
Mus musculus (45)
Panicum virgatum (45)
Pseudomonas aeruginosa PA103 (45)
Pseudomonas aeruginosa SJTD-1 (45)
Rabies virus Nishigahara RCEH (45)
Rattus norvegicus (45)
Rattus rattus (45)
Rhodococcus jostii RHA1 (45)
Rhodopseudomonas palustris (45)
Sorghastrum nutans (45)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (45)
Streptococcus pneumoniae (45)
Streptomyces coelicolor A3(2) (45)
Synechocystis sp. PCC 6803 (45)
Tripsacum dactyloides (45)
Saccharomyces cerevisiae (1)

Repository

pride (45)
MetaboLights (2)
biostudies-arrayexpress (1)

Tissue

Cell culture (14)
Bone marrow (4)
Bone marrow cell (4)
Brain (4)
Liver (3)
Stem cell (3)
Epithelial cell (2)
Heart (2)
Lung (2)
Macrophage (2)
Adipose tissue (1)
B cell (1)
Blood (1)
Blood cell (1)
Blood plasma (1)
Cell line cell (1)
Electrically active cell (1)
Eukaryotic cell (1)
Mammary gland epithelial cell (1)
Monocyte (1)
Permanent cell line cell (1)
Primary cell (1)
Skeletal muscle (1)
Testis (1)
Venom (1)
Whole body (1)

Disease

Acute leukemia (4)
Alzheimer's disease (1)
Breast cancer (1)
Developmental and epileptic encephalopathy 1 (1)
Disease free (1)
Duchenne muscular dystrophy (1)
Epilepsy (1)
Fragile X syndrome (1)
Glioblastoma (1)
Hepatocellular carcinoma (1)
Lung carcinoma (1)
Lymphoma (1)
Lysosomal storage disease (1)
Plasmodium falciparum malaria (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (28)
Bottom-up proteomics (10)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Mass spectrometry (2)
Data-independent acquisition (2)
SWATH MS (2)
All-ion fragmentation (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

Direct infusion MS - positive (2)
Direct infusion MS - negative (1)

Publication Date

2016 (10)
2024 (9)
2026 (5)
2025 (4)
2020 (4)
2017 (4)
2021 (2)
2023 (2)
2022 (2)
2019 (2)
2014 (2)
2012 (1)
2018 (1)

CHEBI ID

CHEBI:141312 (1)
CHEBI:190216 (1)
CHEBI:180468 (1)
CHEBI:72532 (1)
CHEBI:141311 (1)
CHEBI:137195 (1)
CHEBI:137899 (1)
CHEBI:178052 (1)
CHEBI:187785 (1)
CHEBI:142363 (1)
CHEBI:78128 (1)
CHEBI:78068 (1)
CHEBI:79007 (1)
CHEBI:78127 (1)
CHEBI:78069 (1)
CHEBI:78053 (1)
CHEBI:77016 (1)
CHEBI:78893 (1)
CHEBI:78072 (1)
CHEBI:62920 (1)
CHEBI:78125 (1)
CHEBI:78049 (1)
CHEBI:25626 (1)
CHEBI:36434 (1)
CHEBI:78124 (1)
CHEBI:137434 (1)
CHEBI:78123 (1)
CHEBI:78095 (1)
CHEBI:78122 (1)
CHEBI:78121 (1)

Metabolite Name

Phosphatidylinositol 40:7 (1)
Phosphatidylinositol 38:3 (1)
Phosphatidylserine 42:4 (1)
Phosphatidylinositol 36:0 (1)
Phosphatidylcholine 42:4 (1)
Phosphatidylinositol 36:1 (1)
Phosphatidylcholine 42:5 (1)
Phosphatidylserine 42:8 (1)
Phosphatidylinositol 40:5 (1)
Phosphatidylinositol 40:6 (1)
Phosphatidylcholine 40:2 (1)
Phosphatidylserine 40:3 (1)
Phosphatidylserine 40:5 (1)
Phosphatidylinositol 38:1 (1)
Phosphatidylinositol 38:4 (1)
Phosphatidylinositol 38:5 (1)
Phosphatidylinositol 38:6 (1)
Phosphatidylserine 38:1 (1)
Sphingomyelin 42:0 (1)
Phosphatidylserine 38:3 (1)
Sphingomyelin 42:2 (1)
Phosphatidylserine 42:2 (1)
Phosphatidylcholine 38:3 (1)
Phosphatidylserine 38:4 (1)
Phosphatidylserine 42:3 (1)
Phosphatidylcholine 38:4 (1)
Phosphatidylglycerol 43:6 (1)
Phosphatidic acid 44:6 (1)
Phosphatidylinositol 36:2 (1)
Phosphatidylinositol 36:3 (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

ChIP-chip by array (1)

Release Date

2022 (18)
2021 (16)
2019 (15)
2025 (14)
2024 (14)
2026 (12)
2023 (10)
2018 (9)
2020 (8)
2016 (7)
2015 (6)
2017 (5)
2014 (5)
2012 (3)
2013 (2)
2011 (2)
2009 (2)
2010 (1)
2004 (1)
2002 (1)

Lab affiliation

Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (5)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (3)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (2)
Brunel University London (1)
CSSB Centre for Structural Systems Biology c/o Deutsches Elektronen-Synchrotron DESY Notkestraße 85, Building 15 D-22607 Hamburg (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK (1)
Centro Nacional de Biotecnología CNB/CSIC (1)
Centro de Investigación Médica Aplicada (CIMA), Clínica Universidad de Navarra (CUN) (1)
Charité Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW1 1AT, UK The Wellcome Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7BN, UK Max Planck Institute for Molecular Genetics, 14195 Berlin, Germany (1)
Comprehensive Pneumology Center (CPC), University Hospital, Ludwig-Maximilians University, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, Germany (1)
Department I of Internal Medicine, Cologne, Germany (1)
Department of Biochemistry and Molecular Biology, Center for High-throughput Biology, UBC, Vancouver, Canada (1)
Department of Immunobiology University of Lausanne Chemin des Boveresses 155 CH-1066 Epalinges, Switzerland (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czech Republic (1)
Department of Physiology, Perelman School of Medicine, UPenn (1)
Department of breast surgical oncology, Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, People's Republic of China (1)
Director, Proteomics and Metabolomics Facility, Center for Open Research Resources and Equipment, University of Connecticut, Storrs, CT, USA (1)
Friedrich Miescher Institute for Biomedical Research (FMI), Basel, Switzerland (1)
Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (1)
GlaxoSmithKline CMC Analytical (1)
Institute of Molecular and Cell Biology, Agency for Science, Technology and Research, TBP Lab (1)
Krefting Research Centre, Department of Internal Medicine and Clinical Nutrition, University of Gothenburg, Gothenburg, Sweden (1)
Krefting Research Centre, Institute of Medicine, Sahlgrenska Academy, University of Gothenburg, Sweden (1)
Laboratório Especial de Toxinologia Aplicada Instituto Butantan Av. Vital Brasil 1500, 05503-000, São Paulo, Brazil Tel 55 11 2627 9732 Fax 55 11 3726 1024 (1)
Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Adolf-Reichwein-Str. 23, 07745, Jena, Germany (1)
Leibniz-Institut für Analytische Wissenschaften - ISAS - e.V. Otto-Hahn-Str. 6b D-44227 Dortmund Germany Tel.: +49 (0) 231-1392-4143 Fax: +49 (0) 231-1392-4850 (1)
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Germany (1)
Molecular proteomics laboratory (MPL), Institut für Molekulare Medizin, Medizinische Fakultät, Heinrich-Heine-Universität, Universitätsstraße 1, D-40225 Düsseldorf (1)
OncoProteomics Laboratory, Dept. of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (1)
Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuchâtel, Switzerland (1)

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Visualization of lysosomal membrane proteins by cryo-electron tomography

Dysfunction in lysosomal membrane proteins and their associated complexes impairs the lysosome's essential role as a key signaling hub within the cell. This disruption underlies severe neurological disorders, such as lysosomal storage diseases and cancer. While direct visualization of the proteomic ...

ORGANISM(S): Homo sapiens (Human)

2025-10-17 | PXD055923 | Pride

Persistent dysbiosis of duodenal microbiota in patients with controlled pediatric Crohn's disease after resolution of inflammation.

Not available

S-EPMC11148174 | biostudies-literature

90 min Met4 hyperactivation ChIP-chip

Identification of in vivo binding targets of Met4 and Met32 by conducting chromatin immunoprecipitation studies using genomic tiling arrays (ChIP-on-chip 4X44K whole yeast genome arrays by Agilent) following 90 minutes Met4 hyperactivation.

ORGANISM(S): Saccharomyces cerevisiae

2012-02-21 | E-MEXP-3302 | biostudies-arrayexpress

High incidence of preharvest colonization of huanglongbing-symptomatic citrus sinensis fruit by Lasiodiplodia theobromae (Diplodia natalensis) and exacerbation of postharvest fruit decay by that fungus.

Not available

S-EPMC4272719 | biostudies-literature

Modeling of mitochondrial bioenergetics and autophagy impairment in MELAS-mutant iPSC-derived retinal pigment epithelial cells

Not available

S-EPMC9205099 | biostudies-literature

An undergraduate laboratory experiment with real-world applications: Utilizing templateless polymerase chain reaction and real-time polymerase chain reaction to test for SARS-CoV-2 RNA.

Not available

S-EPMC9011848 | biostudies-literature

Systemic Therapy Improvements Will Render Locoregional Treatments Obsolete for Patients with Cancer with Liver Metastases.