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ProteomicsPINE: An Automation Tool to Extract & Visualize Functionally Enriched Networks from Mass Spectrometry-Based Proteomics Datasets
Recent surges in mass spectrometry-based proteomics studies demands a concurrent rise in speedy and optimized data processing tools and pipelines. While several stand-alone databases exist that store gene interaction and annotation information, we developed Protein Interaction Network Extractor (PIN...
ORGANISM(S): Mus Musculus 
2021-02-23 | PXD017324 | panorama
UnknownPhenotypic trait variation in a long-term multisite common garden experiment of Scots pine in Scotland.
Not available
S-EPMC9636140 | biostudies-literature
UnknownIdentifying and testing marker-trait associations for growth and phenology in three pine species: Implications for genomic prediction.
Not available
S-EPMC8867712 | biostudies-literature
MetabolomicsMicrobial community functioning during plant litter decomposition

Microbial life in soil is fueled by dissolved organic matter (DOM) that leaches from the litter layer. It is well known that decomposer communities adapt to the available litter source, but it remains unclear if they functionally compete or synergistically address different litter types. Therefor...

2024-02-14 | MTBLS1885 | MetaboLights
TranscriptomicsPlatform comparison and transcription profiling of mixed tissue RNA samples formulated to contain different ratios of RNA for each of four rat tissues (brain, liver, kidney, and testes) on Affymetrix RAE230A, CodeLink UniSet Rat I, and Agilent G4130A rat oligonucleotide arrays
This experiment is a test of a reagent that can provide a basis for performance assessments on Affymetrix RAE230A, CodeLink UniSet Rat I, and Agilent G4130A rat oligonucleotide arrays. The reagent is a set of two mixed tissue RNA samples formulated to contain different ratios of RNA for each of f...
ORGANISM(S): Rattus norvegicus 
2010-03-30 | E-TABM-16 | biostudies-arrayexpress
TranscriptomicsGermination of Leafy Spurge (Euphorbia esula) Seeds under Constant and Alternating Temperature
Transcriptome changes were investigated for Euphorbia esula (leafy spurge) seeds with a focus on the effect of constant and diurnal fluctuating temperature on dormancy and germination. Leafy spurge seeds do not germinate when incubated for 21 days at 20°C constant temperatures, but nearly 30% germin...
ORGANISM(S): Euphorbia esula 
2010-06-01 | E-GEOD-18533 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of the radicle and micropylar endosperm cap of Lepidium seeds during germination in ABA
An experiment was performed to compare global transcription patterns in two tissues of Lepidium sativum seeds at different times during imbibition leading up to, but not including, radicle protrusion from the seed (e.g. germination). RNA extractions from the two tissues were hybridised to CATMA Arab...
ORGANISM(S): Lepidium sativum 
2010-10-02 | E-TABM-743 | biostudies-arrayexpress
UnknownResponse of methanotrophic communities to afforestation and reforestation in New Zealand.
Not available
S-EPMC3197171 | biostudies-literature
UnknownPinus Susceptibility to Pitch Canker Triggers Specific Physiological Responses in Symptomatic Plants: An Integrated Approach.
Not available
S-EPMC6491765 | biostudies-literature
MetabolomicsCryogenic OrbiSIMS Localizes Semi-Volatile Molecules in Biological Tissues
OrbiSIMS is a recently developed instrument for label-free imaging of chemicals with micron spatial resolution and high mass resolution. We report a cryogenic workflow for OrbiSIMS (Cryo-OrbiSIMS) that improves chemical detection of lipids and other biomolecules in tissues. Cryo-OrbiSIMS boosts ioni...
2023-03-15 | MTBLS1873 | MetaboLights
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