Pinto E E - OmicsDI

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Unknown (3821)
Proteomics (177)
Transcriptomics (73)
Multiomics (57)
Metabolomics (11)
Genomics (6)
Models (2)
Other (1)

Organisms

Homo sapiens (141)
Mus musculus (30)
Rattus norvegicus (5)
Danio rerio (5)
Clostridium autoethanogenum (3)
Escherichia coli (3)
Zea mays (3)
Synechocystis sp. PCC 6803 (2)
Helicoverpa armigera (2)
Streptomyces coelicolor A3(2) (2)
Anopheles gambiae (2)
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 (2)
Neurospora crassa (1)
Schizosaccharomyces pombe (1)
Vitis vinifera (1)
Streptococcus pneumoniae (1)
Oncorhynchus mykiss (1)
Enterococcus faecalis (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Citrus (1)
Citrus medica (1)
Fungi (1)
Arbutus unedo (1)
Bitis rhinoceros (1)
Caenorhabditis elegans (1)
Carica papaya (1)
Echis leucogaster (1)
Elizabethkingia meningoseptica (1)
Leishmania sp. (1)

Repository

pride (80)
biostudies-arrayexpress (77)
PeptideAtlas (73)
PAXDB (15)
MetaboLights (7)
EGA (4)
GNPS (4)
MassIVE (4)
PanoramaPublic (3)
BioModels (2)
jPOST (1)
ENA (1)

Tissue

Others (24)
Cell culture (14)
Epithelial cell (10)
Heart (6)
Male Reproductive System (6)
Female Reproductive System (5)
Liver (5)
Permanent cell line cell (4)
Plant cell (4)
Kidney (3)
Lung (3)
Brain (3)
Kidney (3)
Leaf (3)
Prokaryotic cell (3)
Root (3)
Pancreas (2)
Heart (2)
Stomach (2)
Venom (2)
Adrenal Gland (1)
Digestive System (1)
Bladder (1)
Blood (1)
Blood plasma (1)
Brown adipose tissue (1)
Brown fat cell (1)
Callus culture (1)
Cardiac muscle cell (1)
Cell suspension culture (1)

Disease

Breast cancer (2)
Cervix carcinoma (2)
Neuroblastoma (2)
Normal (1)
Alzheimer's disease (1)
COVID-19 (1)
Cardiovascular system disease (1)
Chronic myeloid leukemia (1)
Disease free (1)
Gastric adenocarcinoma (1)
Glioblastoma (1)
Kidney disease (1)
Malaria (1)
Obesity (1)
Pancreatic ductal adenocarcinoma (1)
Parkinson's disease (1)
Renal clear cell carcinoma (1)
Stomach cancer (1)
Trypanosomiasis (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (80)
Shotgun proteomics (37)
Affinity purification coupled with mass spectrometry proteomics (19)
Bottom-up proteomics (9)
Data-independent acquisition (9)
Mass spectrometry (6)
HDMSE (6)
Data-dependent acquisition (3)
Gel-based experiment (3)
SWATH MS (3)
MSE (2)
Top-down proteomics (2)
Affymetrix 6.0, Illumina Genome Analyzer II (1)
Mass spectrometry assay (1)
NMR spectroscopy assay (1)
All-ion fragmentation (1)

Instrument Platform

LTQ Orbitrap Elite (29)
LTQ Orbitrap Velos (29)
Agilent Q-ToF (15)
Liquid Chromatography MS - negative - reverse phase (4)
Liquid Chromatography MS - positive - reverse phase (4)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Impact (2)
Bruker maXis ESI Quadrupole TOF (2)
Xevo G2 Q-Tof (2)
G2565BA DNA microarray scanner [Agilent] (1)
NextSeq 2000 (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Orbitrap Fusion Lumos (1)
TimsTOF (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) - (1)
TSQ Quantum Ultra (Thermo Scientific) (1)

Publication Date

2014 (94)
2023 (24)
2011 (21)
2025 (14)
2020 (13)
2022 (12)
2018 (12)
2015 (12)
2026 (9)
2019 (9)
2024 (9)
2013 (8)
2009 (7)
2010 (6)
2012 (4)
2008 (4)
2006 (2)
2021 (2)
2017 (1)
2016 (1)
2005 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

ENSEMBL ID

ENSG00000170477 (54)
ENSG00000229353 (34)
ENSG00000147251 (20)
ENSDARG00000000103 (17)
ENSDARG00000001431 (17)
ENSDARG00000001915 (17)
ENSDARG00000001950 (17)
ENSDARG00000001993 (17)
ENSDARG00000002480 (17)
ENSDARG00000005039 (17)
ENSDARG00000005560 (17)
ENSDARG00000005791 (17)
ENSDARG00000006399 (17)
ENSDARG00000007219 (17)
ENSDARG00000009285 (17)
ENSDARG00000009484 (17)
ENSDARG00000010149 (17)
ENSDARG00000013078 (17)
ENSDARG00000016301 (17)
ENSDARG00000016393 (17)
ENSDARG00000017014 (17)
ENSDARG00000017624 (17)
ENSDARG00000018404 (17)
ENSDARG00000021124 (17)
ENSDARG00000022767 (17)
ENSDARG00000023323 (17)
ENSDARG00000025012 (17)
ENSDARG00000025301 (17)
ENSDARG00000025350 (17)
ENSDARG00000025635 (17)

CHEBI ID

CHEBI:15428 (2)
CHEBI:15729 (2)
CHEBI:15741 (2)
CHEBI:16015 (2)
CHEBI:16335 (2)
CHEBI:16414 (2)
CHEBI:16467 (2)
CHEBI:16643 (2)
CHEBI:16857 (2)
CHEBI:16977 (2)
CHEBI:17115 (2)
CHEBI:17191 (2)
CHEBI:17203 (2)
CHEBI:17295 (2)
CHEBI:17858 (2)
CHEBI:17895 (2)
CHEBI:18012 (2)
CHEBI:30769 (2)
CHEBI:10016 (1)
CHEBI:100241 (1)
CHEBI:10088 (1)
CHEBI:10137 (1)
CHEBI:10361 (1)
CHEBI:104011 (1)
CHEBI:10582 (1)
CHEBI:116314 (1)
CHEBI:11791 (1)
CHEBI:13022 (1)
CHEBI:131700 (1)
CHEBI:131762 (1)

Metabolite Name

Alanine (2)
Aspartic acid (2)
Citrate (2)
Fumarate (2)
Glutamine (2)
Lactic acid (2)
Naringenin (2)
Phenylalanine (2)
Shikimic acid (2)
Succinic acid (2)
Taurine (2)
Threonine (2)
Tryptophan (2)
Tyrosine (2)
(+)-Aspidospermidine (1)
(+)-Syringaresinol O-beta-D-glucoside (1)
(+)-secoisolariciresinol diglucoside (1)
(-)-11-hydroxy-9,10-dihydrojasmonic acid 11-beta-D-glucoside (1)
(-)-Columbianetin (1)
(-)-Epigallocatechin 3-gallate 7-glucoside 4"-glucuronide (1)
(-)-Jasmonic acid (1)
(-)-epicatechin (1)
(15S)-15-Hydroxy-5,8,11-cis-13-trans-eicosatetraenoate (1)
(2S)-2-Butanol O-[b-D-Apiofuranosyl-(1->6)-b-D-glucopyranoside] (1)
(2S)-2-hydroxybutanedioic acid (1)
(2b,3b)-Dihydroxy-30-nor-12,20(29)-oleanadiene-28-glucopyranosyloxy-23-oic acid 3-glucuronide (1)
(3-hydroxy-2-octadeca-9,12-dienoyloxypropyl) octadeca-9,12-dienoate (1)
(6Z,9Z,12Z)-Octadecatrienoic acid (1)
(7'R)-(+)-Lyoniresinol 9'-glucoside (1)
(9R,10R)-Dihydroxyoctadecanoic acid (1)

IsPrivate

False (2)

First Public Date

2019 (1)

Modelling Approach

Biochemical network (1)
Other (1)

Study type

Transcription profiling by array (35)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA from single cells (6)
Genotyping by array (5)
ChIP-chip by array (4)
RNA-seq of coding RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (1)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (527)
2023 (495)
2021 (485)
2025 (449)
2024 (396)
2020 (313)
2019 (227)
2018 (223)
2017 (125)
2015 (114)
2016 (111)
2014 (85)
2026 (70)
2011 (63)
2013 (58)
2012 (54)
2010 (44)
2009 (24)
2008 (16)
2006 (7)
2005 (4)
2007 (4)
2004 (2)
2003 (1)
2001 (1)

Lab affiliation

Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany. (4)
Fondazione Ri.Med Department of Laboratory Medicine and Advanced Biotechnologies, Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione (IRCCS - ISMETT) Via Ernesto Tricomi, 5 - 90127 Palermo (3)
TDI Mass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, Roosevelt Drive, Oxford OX3 7FZ, UK (3)
Institute of Biochemistry II, Goethe University School of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Riedberg Campus, Max-von-Laue-Straße 15, 60438 Frankfurt am Main, Germany (2)
Istituto Giannina Gaslini (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
Proteomics Program, Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research (NNF-CPR), University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (2)
1. Department of Integrative Plant Biology, Institute of Plant Genetics, Polish Academy of Sciences, Poznań, Poland. 2. Associação CECOLAB, Rua Nossa Sra. da Conceição2, 3405-155 Oliveira do Hospital, Portugal (1)
Angiogenesis Laboratory, Centro Cardiovascular da Universidade de Lisboa (CCUL@RISE), Lisbon School of Medicine of the Universidade de Lisboa; Lisbon, 1649-028, Portugal (1)
Australian Institute for Bioengineering and Nanotechnolog (AIBN), The University of Queensland (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland (1)
Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland, Australia (1)
Biological Chemistry and Drug Discovery Wellcome Centre for Anti-Infectives Research (WCAIR) School of Life Sciences University of Dundee DUNDEE DD15EH UK (1)
Biomolecular characterization unit, Center for Sustainable Resource Science, RIKEN (1)
Bristol Renal University of Bristol UK (1)
Centro de Pesquisas em Biologia Molecular e Funcional (CPBMF), Instituto Nacional de Ciência e Tecnologia em Tuberculose (INCT-TB), Programa de Pós-Graduação em Biologia Celular e Molecular - Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, Brazil (1)
Clayton Foundation Laboratories for Peptide Biology The Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla, CA, USA (1)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (1)
Department of Chemical Science - University of Naples "Federico II" (1)
Department of Chemical Science, University of Naples 'Federico II' (1)
Department of Genome Sciences Department of Computer Science and Engineering University of Washington (1)
Department of Immunotechnology, Lund University, Medicon Village, Lund, Sweden (1)
Department of Laboratory Medicine and Advanced Biotechnologies, Istituto Mediterraneo per i Trapianti e Terapie ad Alta Specializzazione (IRCCS - ISMETT) Via Ernesto Tricomi, 5 - 90127 Palermo (1)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (1)
Department of Morphology and Function, Faculty of Veterinary Medicine, University of Lisbon, Portugal (1)
ETH (1)
Federal University of Rio de Janeiro (1)
Fondazione Ri.MED, Proteomics lab, Palermo (1)
General Biology Department, Universidade Federal de Viçosa, Brazil (1)
Head of Mass Spectrometry Laboratory, Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil. (1)

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Identification of novel tissue-specific transcription arising from E-cadherin/CDH1 intron2: a novel protein isoform increases gastric cancer cell invasion and angiogenesis.

E-cadherin, a protein encoded by the CDH1 gene is the dominant epithelial cell adhesion molecule playing a crucial role in epithelial tissue polarity and structural integrity. The progression of 90% or more carcinomas is believed to be mediated by disruption of normal E-cadherin expression, subcellu...

ORGANISM(S): Homo sapiens

2012-08-01 | E-GEOD-32540 | biostudies-arrayexpress

The antimicrobial peptide Magainin-2 interacts with BamA impairing folding of E. coli membrane proteins

In this paper we investigated the mechanism of action of Maganin-2 (Mag-2), a well-known antimicrobial peptide isolated from the African clawed frog Xenopus laevis, by functional proteomic approaches. Several proteins belonging to E. coli macromolecular membrane complexes were identified as Mag-2 pu...

ORGANISM(S): Escherichia coli

2023-03-11 | PXD037418 | Pride

Hepatitis E Virus in the Wild Boar Population: What Is the Real Zoonotic Risk in Portugal?

Not available

S-EPMC10535446 | biostudies-literature

Salt-inducible kinase 1 regulates E-cadherin expression and intercellular junction stability.

Not available

S-EPMC3405263 | biostudies-literature

Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

Cynomolgus monkeys (Macaca fascicularis) experimentally and naturally infected with hepatitis E virus: The bone marrow as a possible new viral target.

Not available

S-EPMC6168161 | biostudies-literature

Bis{(E)-3-[(diethyl-methyl-ammonio)meth-yl]-N-[3-(N,N-dimethyl-sulfamo-yl)-1-methyl-pyridin-4-yl-idene]-4-methoxy-anilinium} tetra-iodide penta-hydrate.

Not available

S-EPMC2968188 | biostudies-literature

Salinirifamycins A-E: Rifamycin S Derivatives from the Brazilian Marine Actinomycete <i>Salinispora arenicola</i>.

Not available

S-EPMC12836363 | biostudies-literature

A new species of Echinostoma (Trematoda: Echinostomatidae) from the 'revolutum' group found in Brazil: refuting the occurrence of Echinostoma miyagawai (=E. robustum) in the Americas.

Not available