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MetabolomicsHigh complexity and diel dynamics of planktonic microbiome revealed by multi-omics in Taihu, China

Cyanobacterial blooms result from continued short-term succession of planktonic microbiomes, but these short-term variations are little known. Here we address this question with a field diel study in Lake Tai. By integrating untargeted metabolomics—verified by targeted metabolomics—and metagenomi...

2022-03-02 | MTBLS3038 | MetaboLights
MetabolomicsChitin utilization by marine picocyanobacteria and the evolution of a planktonic lifestyle.
Marine picocyanobacteria Prochlorococcus and Synechococcus, the most abundant photosynthetic cells in the oceans, are generally thought to have a primarily single-celled and free-living lifestyle. However, while studying the ability of picocyanobacteria to supplement photosynthetic car...
2024-02-21 | MTBLS5229 | MetaboLights
ProteomicsProteomics of the periodontal pathogen Prevotella intermedia secretome in biofilm and planktonic lifestyles
Protein secretion into extracellular space is an important virulence mechanism both among Gram negative and Gram-positive bacteria. Prevotella intermedia, an important species associated with periodontitis, is known to be resistant to several antibiotics. Since P. intermedia is a part of normal oral...
ORGANISM(S): Prevotella intermedia ATCC 25611 = DSM 20706 
2022-05-19 | PXD029419 | Pride
Proteomics Virulence Planktonic Prevotella Biofilm Secretome 
TranscriptomicsEscherichia coli biofilms vs planktonic culture
Transcription profile of Escherichia coli cells in biofilms under static batch culture was compared to that of E. coli cells in planktonic cultures. Both E. coli biofilm and planktonic cultures were cultivated for 18 h in 10% Luria-Bertani broth at room temperature (20 degree Celsius). Biofilms were...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24914 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiling of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913
We compared genetic profiles of planktonic stage to biofilm stage of deep sea bacterium Pseudoalteromonas sp. SM9913 and revealed genetic features during switch from planktonic to pellicle stage in Pseudoalteromonas sp. SM9913. mRNA profiles of Pseudoalteromonas sp. SM9913 planktonic cells, initia...
ORGANISM(S): Pseudoalteromonas sp. SM9913 
2015-11-03 | E-GEOD-74569 | biostudies-arrayexpress
TranscriptomicsE coli MG1655 biofilm and planktonic gene expression
Bacteria growing as surface-adherent biofilms are better able to withstand chemical and physical stresses than their unattached, planktonic counterparts. Using transcriptional profiling and quantitative PCR, we observed a previously uncharacterized gene, yjfO, to be upregulated during Escherichia co...
ORGANISM(S): Escherichia coli 
2010-06-21 | E-GEOD-18362 | biostudies-arrayexpress
TranscriptomicsEscherichia coli planktonic cultures: mono-species culture vs. mixed-species culture
Transcription profile of Escherichia coli cells in mono-species pure planktonic cultures was compared to that of E. coli cells in E. coli-Stenotrophomonas maltophilia dual-species planktonic cultures E. coli cells were separated from dual-species planktonic cultures before total RNA extraction to el...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24913 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Porphyromonas gingivalis W50 cells grown in biofilm or planktonically
Transcriptomic profiling of P. gingivalis W50 biofilm grown cells to that of planktonic cells.
ORGANISM(S): Porphyromonas gingivalis 
2009-01-31 | E-TABM-467 | biostudies-arrayexpress
GenomicsPlanktonic communities
Planktonic 18S communities Metagenome
PRJNA861873 | ENA
ProteomicsCaspofungin-induced Responses in the Planktonic Cells and Biofilms of Candida albicans
This project investigated the signature profiles of C. albicans planktonic cells and biofilms in response to caspofungin.
ORGANISM(S): Candida Albicans 
2021-01-08 | PXD023480 |
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