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TranscriptomicsRice gene expression in heat stress and dehydration stress - time series
Transcriptome measurements of 14 day old rice leaves (2nd leaf) in heat stress and recovery and dehydration stress and recovery - samples collected every 15 minutes for up to 4h - 480 samples (240 conditions, 2 biological replicates) 5 conditions: control (30C, liquid media); Heat (transferred from ...
ORGANISM(S): Oryza sativa 
2016-07-03 | E-GEOD-74793 | biostudies-arrayexpress
TranscriptomicsTime of day shapes the Arabidopsis drought transcriptomes
Under natural conditions, plants experience episodes of drought for periods of days or longer. Plants respond to drought stress by reconfiguring their transcriptome activity. Transcriptome changes in response to drought are dynamic, and are likely to be shaped by mitigating factors such as diel sign...
ORGANISM(S): Arabidopsis thaliana 
2010-07-30 | E-GEOD-19700 | biostudies-arrayexpress
TranscriptomicsGenotype and time of day shape the Populus drought response
As exposure to episodic drought can impinge significantly on forest health and the establishment of productive tree plantations, there is great interest in understanding the mechanisms of drought response in trees. The ecologically dominant and economically important genus Populus, with its sequence...
ORGANISM(S): Populus maximowiczii x Populus nigra 
2009-12-31 | E-GEOD-15242 | biostudies-arrayexpress
GenomicsNucleosome free chromatin measured by ATAC-seq in Rice leaves (Oryza sativa)
Nucleosome free measurement of 14 day old rice leaves (2nd leaf) in heat stress and recovery and dehydration stress and recovery 5 conditions: control (30C, liquid media; at 0.5h, 2h, 4h); Heat (transferred from 30C to 40C; at 0.5h, 2h, 4h); Heat recovery (transferred back to 30C after 2h at 40C; af...
ORGANISM(S): Oryza sativa 
2016-07-03 | E-GEOD-75794 | biostudies-arrayexpress
TranscriptomicsTranscriptional profiling of Ewing's sarcoma derived exosomes
Exosomes are small RNA and protein containing vesicles that can mediate hetero- and homotypic intercellular communication between normal and malignant cells. Especially, tumor-derived exosomes are believed to mediate reprogramming of the tumor-associated stroma to favor tumor growth and metastasis. ...
ORGANISM(S): Homo sapiens 
2013-05-01 | E-GEOD-42282 | biostudies-arrayexpress
TranscriptomicsIntracellular proliferation and virulence gene expression of Salmonella are influenced by pre-invasion growth conditions
Salmonella invasion of non-phagocytic cells is a dynamic process that requires the translocation of effector proteins into host cells by a type III secretion system (T3SS1) encoded on Salmonella pathogenicity island 1 (SPI1). The signals involved in T3SS1 induction in vivo are not known, but SPI1-in...
ORGANISM(S): Salmonella typhimurium SL1344 
2010-04-19 | E-GEOD-13343 | biostudies-arrayexpress
GenomicsCapture Hi-C identifies the chromatin interactome of colorectal cancer risk loci
Multiple regulatory elements distant to their targets on the linear genome can influence the expression of a single gene through chromatin looping. Chromosome conformation capture implemented in Hi-C allows for genome-wide agnostic characterization of chromatin contacts. However, detection of functi...
EGAS00001001085 | EGA
TranscriptomicsMondoA is highly expressed in acute lymphoblastic leukemia and modulates metabolism, differentiation and survival
Acute lymphoblastic leukemia (ALL) is the most common childhood cancer. To identify novel candidates for targeted treatment of childhood ALL, we performed a comprehensive transcriptome analysis yielding a set of genes specifically overexpressed in ALL. Among them we identified MondoA - a transcripti...
ORGANISM(S): Homo sapiens 
2012-07-31 | E-GEOD-33967 | biostudies-arrayexpress
TranscriptomicsTranscriptome expression profile of embryonic liver and placenta tissue from BAHD1+/+ (WT) and BAHD1-/- (KO) mice at embryonic day E16.5
Comparisons of embryonic liver and placenta gene expression profiles of BAHD1-KO mice to those of wild-type littermate mice We used DNA microarrays to identify the repertoire of genes differentially expressed by ablation of the BAHD1 gene in embryos.
ORGANISM(S): Mus musculus 
2016-03-15 | E-GEOD-53442 | biostudies-arrayexpress
UnknownExtreme drought impacts have been underestimated in grasslands and shrublands globally.
Not available
S-EPMC10823251 | biostudies-literature
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