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ProteomicsComparative proteomics of plant biomass degradation by the ascomycete fungus Podospora anserine
The project compares the production of plant biomass degrading enzymes by Podospora anserina during growth on different feed stocks.
ORGANISM(S): Podospora anserina 
2017-02-13 | PXD005170 | Pride
Induction Cellulase Pectinase Plant biomass degradation Xylanase Fungal enzymes 
TranscriptomicsRNA-seq of the thermophilic biomass-degrading fungus Malbranchea cinnamomea FCH 10.5 when grown on glucose, wheat bran and beechwood xylan
The thermophilic fungus Malbranchea cinnamomea belongs to the order of Onygenales and is a promising source of thermostable, industrially relevant biocatalysts, as it can grow at temperatures of more than 50°C and is able to utilise many different types of plant biomass. Enzymes from M. cinnamomea t...
ORGANISM(S): Malbranchea cinnamomea 
2017-10-27 | E-MTAB-6157 | biostudies-arrayexpress
ProteomicsActivity-based protein profiling of xylan-degrading glycoside hydrolases in Aspergillus secretomes
Plant polysaccharides represent a virtually unlimited feedstock for the generation of biofuels and other commodities. However, the extraordinary recalcitrance of plant polysaccharides towards breakdown necessitates a continued search for enzymes that degrade these materials efficiently under defined...
ORGANISM(S): Aspergillus Niger (ncbitaxon:5061) 
2019-04-24 | MSV000083714 | MassIVE
TranscriptomicsExpression profiling of Ruminococcus flavefaciens FD-1 with growth on cellulose or cellobiose
This study compares growth of Ruminococcus flavefaciens FD-1 with cellulose or cellobiose as the carbohydrate substrate. Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bac...
ORGANISM(S): Ruminococcus flavefaciens FD-1 
2010-05-16 | E-GEOD-15916 | biostudies-arrayexpress
TranscriptomicsGrowth, enzymatic, and transcriptomic analysis of xyr1 deletion reveals a major regulator of plant biomass-degrading enzymes in Trichoderma harzianum
The regulation of plant biomass degradation by fungi is critical to the carbon cycle, and applications in bioproducts and biocontrol. Trichoderma harzianum is an important plant biomass degrader, enzyme producer, and biocontrol agent, but few putative major transcriptional regulators have been delet...
ORGANISM(S): Trichoderma harzianum 
2023-12-26 | GSE252008 | GEO
MetabolomicsSoil microbial adaptation to carbon deprivation: Shifts in lignocellulolytic gene profiles following long-term plant exclusion

Background:

Lignocellulose represents a primary input of organic carbon (C) into soils, yet the identity of specific microorganisms and genes which drive lignocellulose turnover in soils remain poorly understood. To address this knowledge gap, we used a 10-year grassland plant-exclusion exp...

2025-07-16 | MTBLS12728 | MetaboLights
GenomicsGrowth, enzymatic, and transcriptomic analysis of xyr1 deletion reveals a major regulator of plant biomass-degrading enzymes in Trichoderma harzianum
Growth, enzymatic, and transcriptomic analysis of xyr1 deletion reveals a major regulator of plant biomass-degrading enzymes in Trichoderma harzianum
PRJNA1057097 | ENA
ProteomicsBlocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components.
Fungi produce a wide range of enzymes that allow them to grow on diverse plant biomass. Wheat bran is a low-cost substrate with high potential for biotechnological applications. It mainly contains cellulose and (arabino)xylan, with starch, proteins, lipids and lignin as minor components. In this stu...
ORGANISM(S): Aspergillus niger NRRL3 
2021-06-28 | PXD023338 | Pride
Aspergillus niger Combinatorial deletions Lc-msms. Transcription factors Plant biomass Regulation 
UnknownPlant-polysaccharide-degrading enzymes from Basidiomycetes.
Not available
S-EPMC4248655 | biostudies-literature
UnknownHigh Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics.
Not available
S-EPMC8098120 | biostudies-literature
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