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TranscriptomicsTracking Early Mammalian Organogenesis – Prediction and Validation of Differentiation Trajectories at Whole Organism Scale
This project is based on the extension of the single cell transcriptomics atlas of mouse development towards E9.5. Inference of cell differentiation trajectories was carried out using Waddington-Optimal Transport, and the resulting computational reconstruction was contrasted with grafting experiment...
ORGANISM(S): Mus musculus 
2023-01-01 | E-MTAB-11763 | biostudies-arrayexpress
TranscriptomicsTimecourse single-cell RNA-seq of whole rabbit embryos sampled across gestational days 7, 8 and 9
We characterised the transcriptomic profiles of 146,133 individual cells (post-QC) from whole rabbit embryos spanning gestational days 7, 8 and 9. These experiments were performed to elucidate the molecular programmes underlying gastrulation and early organogenesis in a non-rodent mammal. Combined w...
ORGANISM(S): Oryctolagus cuniculus 
2022-08-26 | E-MTAB-11836 | biostudies-arrayexpress
UnknownA global database of soil microbial phospholipid fatty acids and enzyme activities.
Not available
S-EPMC12475190 | biostudies-literature
TranscriptomicsDown-regulation of gene expression is a conserved and distinctive feature required for early development of nematode-induced Giant Cells in tomato
Root-knot nematodes (RKN; Meloidogyne spp.) are sedentary parasites that affect a high variety of plants with a negative impact in the production of crops such as tomato. The infective RKN induces in the roots 4-7 highly specialized feeding cells (giant cells, GCs) developed into a hypertrophy cellu...
ORGANISM(S): Solanum lycopersicum 
2012-06-14 | E-GEOD-30048 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of honey bee queens Apis mellifera L. to investigate the differential effects of insemination volume and substance on reproductive changes
Mating causes dramatic changes in female insects at the behavioral, physiological, and molecular levels. The factors driving these changes (e.g., seminal proteins, seminal volume) and the molecular pathways by which these factors are operating have been characterized only in a handful of insect spe...
ORGANISM(S): Apis mellifera 
2013-05-21 | E-MEXP-3681 | biostudies-arrayexpress
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