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GenomicsPol III transcribed genes, RNA-Seq, C.elegans
Pol III transcribed genes, RNA-Seq, C.elegans
PRJNA973641 | ENA
TranscriptomicsMonovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis
We use male gonads isolated from a Drosophila strain that allows us to obtain enough cells at their primitive status as the starting material to study the endogenous chromatin structure of undifferentiated cells using ChIP-seq. We integrate the ChIP-seq data with RNA-seq data that measures the trans...
ORGANISM(S): Drosophila melanogaster 
2010-04-16 | E-GEOD-19325 | biostudies-arrayexpress
GenomicsIntegrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classes
Routine methods for assaying steady-state mRNA levels such as RNA-seq and micro-arrays are commonly used as readouts to study the role of transcription factors (TFs) in gene expression regulation. However, cellular RNA levels do not solely depend on activity of TFs and subsequent transcription by RN...
ORGANISM(S): Homo sapiens 
2012-03-09 | E-GEOD-36349 | biostudies-arrayexpress
GenomicspNET-seq (Pol II Ser5) in Arabidopsis
pNET-seq (Pol II Ser5) in Arabidopsis
PRJNA515215 | ENA
UnknownAnalysis of paired end Pol II ChIP-seq and short capped RNA-seq in MCF-7 cells.
Not available
S-EPMC4516138 | biostudies-literature
GenomicsPol III transcribed genes, RNA-Seq, male mouse, duodenum
Pol III transcribed genes, RNA-Seq, male mouse, duodenum
PRJNA973647 | ENA
GenomicsPol III transcribed genes, RNA-Seq, female mouse, duodenum
Pol III transcribed genes, RNA-Seq, female mouse, duodenum
PRJNA973649 | ENA
GenomicsOpen chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity [DNase_seq].
The human body contains thousands of unique cell types, each with specialized functions. Cell identity is governed in large part by gene transcription programs, which are determined by regulatory elements encoded in DNA. To identify regulatory elements active in seven cell lines representative of di...
ORGANISM(S): Homo sapiens 
2011-06-29 | E-GEOD-30224 | biostudies-arrayexpress
GenomicsChIP-seq of Pol II in glioblastoma stem cells
ChIP-seq of Pol II in glioblastoma stem cells
PRJNA742237 | ENA
GenomicsHuman variation in PolII and NF-KappaB binding (ChIP-seq study with Pol II)
We examined genome-wide variation in transcription factor binding in different individuals and a chimpanzee using chromatin immunoprecipitation followed by massively-parallel sequencing (ChIP-Seq). The binding sites of RNA Polymerase II (Pol II) as well as a key regulator of immune responses, NFkB, ...
ORGANISM(S): Pan troglodytes 
2010-03-22 | E-GEOD-19484 | biostudies-arrayexpress
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