Poly-p - OmicsDI

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Transcriptomics (1686)
Genomics (371)
Proteomics (134)
Metabolomics (50)
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Models (2)

Organisms

Homo sapiens (636)
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Caenorhabditis elegans (27)
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synthetic construct (5)
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Pseudomonas aeruginosa PAO1 (5)
Leishmania donovani (4)
Rhizobium leguminosarum (4)
Daphnia magna (4)
Paracoccidioides brasiliensis (4)
Streptomyces venezuelae (4)
Mycolicibacterium smegmatis MC2 155 (4)
Ovis aries (4)
Oryza sativa Japonica Group (4)

Organisms

Homo sapiens (89)
Mus musculus (67)
Rattus norvegicus (9)
Drosophila melanogaster (7)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (4)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (3)
Bos taurus (3)
Danio rerio (3)
Cupriavidus necator H16 (2)
Plasmodium falciparum (2)
Caenorhabditis elegans (2)
Gallus gallus (2)
Bacillus subtilis subsp. subtilis str. 168 (2)
marine sediment metagenome (2)
Plasmodium berghei (2)
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Borna disease virus (1)
Paramyxoviridae (1)
Microlunatus phosphovorus (1)
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Actinophytocola sp. (1)
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Mycobacterium tuberculosis CDC1551 (1)
Fusarium proliferatum (1)
Arabidopsis lyrata (1)
Nannochloropsis oceanica (1)
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Meleagris gallopavo (1)
Physcomitrium patens (1)

Repository

biostudies-arrayexpress (1683)
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geo (93)
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pride (35)
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dbGaP (7)
iProX (7)
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NODE (2)
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Tissue

Cell culture (14)
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Disease

Normal (8)
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Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
XCGD (1)
HPV positive (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
T. circumcincta infection (1)
Not applicable (1)
Colon cancer Dukes C (1)
Blumeria graminis hordei (powdery mildew) inoculation (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
IV (1)
Infected (1)
Primary tumor (1)
Oligodendroglioma (1)
Bladder tumour (1)
Mock infected (1)
Infected (1)
Acute monoblastic leukaemia (1)
Rheumatoid arthritis (1)
IBDV infected (1)
T-cell acute lymphoblastic leukemia (1)
Colonic adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Chronic lymphocytic leukemia (1)
Chronic myelogenous leukemia (1)
Sarcoma (1)
Plasmodium berghei CTRP knockout strain (Dessens et al., 1999) infection (1)

Technology Type

Mass Spectrometry (42)
Mass spectrometry (27)
Shotgun proteomics (19)
Mass spectrometry assay (11)
Bottom-up proteomics (9)
ESI (7)
Affinity purification coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (6)
NMR spectroscopy (4)
Data-independent acquisition (2)
Gel-based experiment (2)
SNP6, ILLUMINA, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
All-ion fragmentation (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (273)
NextSeq 500 (79)
Illumina NovaSeq X (69)
Illumina HiSeq 4000 (64)
Illumina HiSeq 2500 (47)
NextSeq 2000 (41)
Illumina HiSeq 2000 (41)
NextSeq 550 (37)
DNBSEQ-G400 (19)
DNBSEQ-T7 (19)
Axon GenePix 4000B scanning hardware (8)
BGISEQ-500 (8)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (7)
None (7)
NA (7)
N/A (7)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel). (6)
Microcentrifuge (6)
ScanArray 5000 [PerkinElmer] (6)
See manuscript (5)
Scanning hardware (5)
Illumina (5)
FastPrep‑24 homogenizer (MP Biomedicals) (4)
GenePix 4000A [Axon Instruments] (4)
Illumina MiSeq (4)
Illumina HiSeq 1500 (4)
Linux server, HPC cluster (3)
Thermal cycler (Bio-Rad C1000), Agilent 2100 Bioanalyzer, Qubit 4 Fluorometer (3)
Benchtop centrifuge, vortex, NanoDrop or plate reader (for RiboGreen assay), TapeStation (Agilent) (3)
Liquid nitrogen freezer, surgical instruments (3)

Publication Date

2026 (315)
2025 (309)
2010 (158)
2013 (125)
2014 (105)
2015 (98)
2012 (91)
2024 (77)
2011 (75)
2008 (74)
2016 (62)
2009 (61)
2021 (60)
2022 (56)
2007 (51)
2023 (37)
2020 (35)
2006 (35)
2005 (29)
2019 (26)
2004 (24)
2018 (22)
2017 (21)
2003 (1)

UNIPROT ID/AC

5691.AAQ15626 (1)
5691.AAQ15709 (1)
5691.AAQ16021 (1)
5691.AAZ10366 (1)
5691.AAZ10412 (1)
5691.AAZ10463 (1)
5691.AAZ10464 (1)
5691.AAZ10465 (1)
5691.AAZ10466 (1)
5691.AAZ10510 (1)
5691.AAZ10511 (1)
5691.AAZ10512 (1)
5691.AAZ10771 (1)
5691.AAZ10942 (1)
5691.AAZ10991 (1)
5691.AAZ11075 (1)
5691.AAZ11276 (1)
5691.AAZ11337 (1)
5691.AAZ11338 (1)
5691.AAZ11340 (1)
5691.AAZ11529 (1)
5691.AAZ11530 (1)
5691.AAZ11531 (1)
5691.AAZ11532 (1)
5691.AAZ11533 (1)
5691.AAZ11534 (1)
5691.AAZ11535 (1)
5691.AAZ11536 (1)
5691.AAZ11537 (1)
5691.AAZ11660 (1)

CHEBI ID

CHEBI:18012 (8)
CHEBI:15428 (7)
CHEBI:32816 (6)
CHEBI:15741 (6)
CHEBI:30915 (6)
CHEBI:17295 (5)
CHEBI:17754 (5)
CHEBI:78320 (5)
CHEBI:18019 (5)
CHEBI:18050 (5)
CHEBI:7916 (5)
CHEBI:16335 (5)
CHEBI:16414 (5)
CHEBI:30769 (5)
CHEBI:6650 (5)
CHEBI:16857 (5)
CHEBI:15891 (5)
CHEBI:30751 (4)
CHEBI:15603 (4)
CHEBI:17196 (4)
CHEBI:17115 (4)
CHEBI:17053 (4)
CHEBI:15354 (4)
CHEBI:16856 (4)
CHEBI:15422 (4)
CHEBI:17895 (4)
CHEBI:16015 (4)
CHEBI:16870 (4)
CHEBI:17268 (4)
CHEBI:15940 (4)

Metabolite Name

Taurine (12)
L-Asparagine (7)
L-Threonine (7)
Uric acid (7)
Adipic acid (7)
Pantothenic acid (7)
L-Proline (7)
Nicotinic acid (6)
Kynurenic acid (6)
Xanthosine (6)
12-Hydroxydodecanoic acid (6)
Uracil (6)
N-Acetylneuraminic acid (6)
Hypoxanthine (6)
Hexadecanedioic acid (6)
Dihydroxyacetone phosphate (6)
Xanthine (6)
Guanosine (6)
Thymidine (6)
Succinic acid (6)
L-Glutamine (6)
Cytosine (6)
Choline (6)
L-Lysine (6)
L-Valine (6)
Orotic acid (5)
Carnosine (5)
Citrulline (5)
Stearic acid (5)
N4-Acetylcytidine (5)

First Public Date

2014 (37)
2021 (30)
2024 (29)
2026 (28)
2025 (27)
2020 (25)
2022 (22)
2023 (19)
2019 (14)
2018 (11)
2016 (9)
2015 (8)
2013 (7)
2017 (6)

Classification

bacteria (10)
protozoa (5)
viruses (2)
fungi (1)

Study type

Transcription profiling by array (631)
RNA-seq of coding RNA (610)
RNA-seq of non coding RNA (62)
ChIP-seq (61)
RNA-seq of total RNA (61)
RNA-seq of coding RNA from single cells (59)
Other (38)
Unknown experiment type (16)
ChIP-chip by tiling array (13)
CUT&RUN (12)
Comparative genomic hybridization by array (10)
Methylation profiling by array (10)
DNA-seq (9)
ChIP-chip by array (8)
ATAC-seq (7)
RIP-seq (7)
MicroRNA profiling by array (6)
Methylation profiling by high throughput sequencing (6)
High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Transcription profiling by tiling array (3)
RNAi profiling by array (3)
CLIP-seq (3)
MicroRNA profiling by high throughput sequencing (3)
Ribo-seq (3)
Single nucleus RNA sequencing (3)
GRO-seq (2)
Animal - One-color microarray (2)
Plant - High-throughput sequencing (2)
Cell line - One-color microarray (2)

Release Date

2025 (522)
2026 (338)
2022 (312)
2023 (279)
2024 (274)
2021 (271)
2020 (238)
2010 (203)
2019 (197)
2013 (185)
2018 (183)
2015 (180)
2014 (168)
2016 (158)
2017 (145)
2012 (134)
2011 (117)
2008 (94)
2009 (88)
2007 (67)
2006 (41)
2005 (36)
2004 (29)
2003 (7)
2002 (6)
2001 (5)
2000 (5)
1999 (3)
1998 (3)

Lab affiliation

Signalling ISP, Babraham Institute, Cambridge, UK (3)
Associate Professor in Proteomics, Head of Proteomics, Centre for Proteomic Research, University of Southampton, UK (1)
DZNE Munich Neuroproteomics Feodor-Lynen-Str. 17 81377 Munich Germany (1)
Department of Biochemistry and Biotechnology, University of Thessaly, Larissa, Greece (1)
Department of Biochemistry and Molecular Biology Charbonneau Research Institute Cummings School of Medicine University of Calgary (1)
Department of Cancer Research and Molecular Medicine Faculty of Medicine Laboratory Centre, 5th floor. Erling Skjalgssons gt. 1 Norwegian University of Science and Technology NTNU 7006 Trondheim, Norway Tel: +47 72573076; Fax: +47 72576400 Cell. phone: +47 91825455 (1)
Department of Chemistry, Michigan State University, 578 S Shaw Lane, East Lansing, MI 48824, USA (1)
Department of Human Molecular Genetics and Biochemistry Sackler Faculty of Medicine Tel Aviv University Israel (1)
Department of Molecular & Cellular Physiology Stanford University School of Medicine (1)
Department of Molecular Mechanisms of Disease, University of Zurich, Switzerland (1)
Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD (1)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (1)
Head of Center for Microbial Communities Department of Chemistry and Bioscience Aalborg University Fredrik Bajers Vej 7H 9220 Aalborg Denmark (1)
Institute of Molecular Biology (IMB), Mainz, Germany (1)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (1)
Laboratory of Paediatrics, University of Groningen, University Medical Centre Groningen, Groningen, the Netherlands (1)
Lehrstuhl für Neuroproteomik, Technische Universität München und Neuroproteomik, Deutsches Zentrum für Neurodegenerative Erkrankungen, München (1)
Leiden University Medical Center, Center of Proteomics & Metabolomics, Imaging group (1)
MIRCen, UMR9199, CEA, CNRS, Université Paris-Saclay (1)
Proteomics Facility, IZKF Aachen, University Clinic RWTH Aachen (1)
Proteomics Facility, Netherlands Cancer Institute, Amsterdam, Netherlands. (1)
School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong, China (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
State Key Laboratory of Crop Biology, Collaborative Innovation Center of Fruit & Vegetable Quality and Efficient Production, College of Horticulture Science and Engineering, Shandong Agricultural University, Tai-An, Shandong 271018, China (1)
Toxicology Center, University of Saskatchewan, Canada (1)
Toxicology Centre, University of Saskatchewan, Canada (1)
Unité "Pathogenèse de Helicobacter" Department of Microbiology CNRS UMR2001 Institut Pasteur 28 rue du Dr. Roux 75724 Paris cedex 15 (1)
Univ Rouen Normandie, INSA Rouen Normandie, CNRS, Normandie Univ, PBS UMR 6270, F-76000 Rouen, France (1)
Univ. Lille, Inserm, CHU Lille, U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000 Lille, France (1)
Univeristy of Miami Miller School of Medicine (1)

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Accumulation of inorganic polyphosphate mediates metabolic downshift and antibiotic tolerance in Mycobacterium tuberculosis

The stringent response, involving the regulatory molecules inorganic polyphosphate (poly P) and (p)ppGpp, is believed to mediate Mycobacterium tuberculosis persistence. In this study, we identified a novel exopolyphosphatase responsible for poly P hydrolysis. Using two different poly P-accumulating ...

ORGANISM(S): Mycobacterium tuberculosis CDC1551

2015-02-20 | E-GEOD-57868 | biostudies-arrayexpress

Poly(p-phenylene phosphaborene): A Modified Poly(p-phenylene vinylene) with π-Conjugated B═P Linkages.

Not available

S-EPMC12435409 | biostudies-literature

Fish oil/pectin temporally alters gene expression profiles in exfoliated rat colonocytes throughout oncogenesis

We have demonstrated that fish oil/pectin (FO/P) diets protect against colon cancer compared to corn oil/cellulose (CO/C) by upregulating apoptosis and suppressing proliferation. To elucidate the mechanisms whereby FO/P diets induce apoptosis and suppress proliferation during the tumorigenic process...

ORGANISM(S): Rattus norvegicus

2012-02-20 | E-GEOD-27266 | biostudies-arrayexpress

Fabrication of Low-Fouling Surfaces on Alkyne-Functionalized Poly-(p-xylylenes) Using Click Chemistry.

Not available

S-EPMC8780154 | biostudies-literature

Systematic screening of polyphosphate (poly P) levels in yeast mutant cells reveals strong interdependence with primary metabolism.

Not available

S-EPMC1794592 | biostudies-literature

Nanofiltration Performance of Poly(p-xylylene) Nanofilms with Imidazole Side Chains.

Not available

S-EPMC10422224 | biostudies-literature

Probing the Nano-Assembly Leading to Periodic Gratings in Poly(p-dioxanone).