Polyketides - OmicsDI

Show results for

Unknown (947)
Genomics (73)
Metabolomics (27)
Transcriptomics (26)
Proteomics (24)
Multiomics (6)
Models (1)

Organisms

Alphavirus (11)
Anemia (11)
Archaea (11)
Bacteria (11)
Betaherpesvirinae (11)
Borrelia (11)
Streptomyces coelicolor (10)
Bupleurum scorzonerifolium (2)
Homo sapiens (2)
Fusarium fujikuroi (1)
Penicillium chrysogenum (1)
Burkholderia ambifaria (1)
Dictyostelium discoideum (1)
Clostridium acetobutylicum (1)
Mus musculus (1)
Streptomyces rimosus subsp. rimosus (1)
Bupleurum chinense (1)
Aspergillus oryzae (1)
Aspergillus niger (1)
Streptomyces iranensis (1)
Aspergillus nidulans (1)
Durio zibethinus (1)
Staphylococcus aureus (1)
Mycobacterium tuberculosis (1)
Mycale hentscheli (1)
Nicotiana tabacum (1)
Pseudomonas protegens Pf-5 (1)
Solanum tuberosum (1)
Saccharomyces cerevisiae (1)
Streptomyces (1)

Organisms

Bacillus velezensis (3)
Streptomyces sp. AA0539 (1)
Streptacidiphilus sp. PB12-B1b (1)
Streptacidiphilus sp. 4-A2 (1)
Streptacidiphilus sp. P02-A3a (1)
Streptomyces sp. AA1529 (1)
Streptomyces sp. 5-10 (1)
Candidatus Entotheonella serta (1)
Actinopolyspora erythraea (1)
Streptomyces rimosus subsp. rimosus (1)
Bipolaris maydis (1)
insect frass metagenome (1)
Priestia filamentosa (1)
Streptomyces rubrogriseus (1)
Streptomyces ardesiacus (1)
Streptomyces coelicoflavus (1)
Streptomyces rishiriensis (1)
Streptomyces fragilis (1)
Toniniopsis dissimilis (1)
Bacillus sp. F56 (1)
Brevibacillus brevis (1)
Streptomyces sp. SPMA113 (1)
Aspergillus nidulans (1)
Streptomyces rochei (1)
Lindera glauca (1)
Murraya koenigii (1)
Fusarium proliferatum (1)
Streptomyces iranensis (1)
Durio zibethinus (1)
rock metagenome (1)

Repository

ENA (72)
biostudies-arrayexpress (19)
GNPS (15)
MetaboLights (12)
pride (11)
geo (8)
MassIVE (6)
iProX (3)
PanoramaPublic (2)
PAXDB (2)
BioModels (1)

Tissue

Cell culture (4)
Bile (1)
Extracellular vesicle (1)
Hepatocyte (1)
Protoplast (1)
Skeletal muscle cell (1)

Disease

Pancreatic ductal adenocarcinoma (1)
Septicemia (1)

Technology Type

Mass Spectrometry (11)
Mass spectrometry (9)
Bottom-up proteomics (6)
Shotgun proteomics (5)
Data-independent acquisition (4)
Mass spectrometry assay (3)
Data-dependent acquisition (3)

Instrument Platform

Q Exactive (9)
Liquid Chromatography MS - positive - reverse phase (4)
Liquid Chromatography MS - negative - reverse phase (3)
ACQUITY RDa Detector (2)
LCMS-9030 (2)
LTQ Orbitrap Elite (2)
Xevo G2 XS Tof (2)
Liquid Chromatography MS - positive - hilic (2)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
6530B Q-TOF LC/MS (1)
ACQUITY UPLC H-Class (1)
MaXis (1)
MicrOTOF-Q II (1)
Orbitrap Fusion (1)
Q Exactive Plus (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive - reversed-phase-chromatography (1)
Liquid Chromatography MS - negative - reversed-phase-chromatography (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2025 (10)
2023 (9)
2026 (6)
2005 (6)
2024 (6)
2018 (6)
2021 (5)
2022 (4)
2020 (4)
2015 (3)
2014 (3)
2013 (3)
2012 (3)
2011 (2)
2009 (2)
2019 (2)
2017 (1)
2007 (1)
2006 (1)

UNIPROT ID/AC

A0A1S3CTB2_DIACI (2)
A0A1S3CTF3_DIACI (2)
A0A1S3CTU5_DIACI (2)
A0A1S3CTY3_DIACI (2)
A0A1S3CU39_DIACI (2)
A0A1S3CU82_DIACI (2)
A0A1S3CUB6_DIACI (2)
A0A1S3CUK5_DIACI (2)
A0A1S3CUN8_DIACI (2)
A0A1S3CUR6_DIACI (2)
A0A1S3CUU7_DIACI (2)
A0A1S3CV85_DIACI (2)
A0A1S3CVC6_DIACI (2)
A0A1S3CVH1_DIACI (2)
A0A1S3CVV0_DIACI (2)
A0A1S3CVX4_DIACI (2)
A0A1S3CW20_DIACI (2)
A0A1S3CW59_DIACI (2)
A0A1S3CWA9_DIACI (2)
A0A1S3CWB5_DIACI (2)
A0A1S3CWE0_DIACI (2)
A0A1S3CWG9_DIACI (2)
A0A1S3CWK8_DIACI (2)
A0A1S3CWL3_DIACI (2)
A0A1S3CWM4_DIACI (2)
A0A1S3CWQ4_DIACI (2)
A0A1S3CWX0_DIACI (2)
A0A1S3CWX4_DIACI (2)
A0A1S3CWY8_DIACI (2)
A0A1S3CX04_DIACI (2)

CHEBI ID

CHEBI:75632 (2)
CHEBI:69796 (2)
CHEBI:75633 (2)
CHEBI:18026 (2)
CHEBI:50202 (2)
CHEBI:28527 (2)
CHEBI:67486 (2)
CHEBI:16112 (2)
CHEBI:27510 (2)
CHEBI:30763 (2)
CHEBI:30769 (2)
CHEBI:167190 (1)
CHEBI:167189 (1)
CHEBI:167188 (1)
CHEBI:167187 (1)
CHEBI:167186 (1)
CHEBI:167185 (1)
CHEBI:168226 (1)
CHEBI:189815 (1)
CHEBI:187390 (1)
CHEBI:185326 (1)
CHEBI:192966 (1)
CHEBI:192965 (1)
CHEBI:134608 (1)
CHEBI:187414 (1)
CHEBI:186342 (1)
CHEBI:27648 (1)
CHEBI:192964 (1)
CHEBI:192963 (1)
CHEBI:183529 (1)

Metabolite Name

Sweroside (4)
Astragalin (3)
L-Tryptophan (3)
L-Phenylalanine (3)
Procyanidin B3 (2)
Procyanidin B1 (2)
Isoquercitrin (2)
Norgestrel (2)
Solanidine (2)
Geniposide (2)
Gly-Pro (2)
1-Pyrroline (2)
Germacrenone (2)
Naringenin (2)
9-HODE (2)
Betaine (2)
Thymine (2)
Diethanolamine (2)
2-Pyrrolidinone (2)
N-Ethylglycine (2)
2-Hydroxypyridine (2)
Piperidine (2)
Canarione (2)
Curdione (2)
Psoralen (2)
Ganoderic acid B (2)
Vulgaxanthin I (2)
Galactosylhydroxylysine (2)
Daidzein (2)
Prolylhydroxyproline (2)

First Public Date

2025 (9)
2018 (9)
2023 (8)
2026 (7)
2020 (7)
2024 (5)
2022 (4)
2021 (4)
2019 (4)
2016 (4)
2013 (4)
2017 (3)
2015 (2)
2014 (2)

Modelling Approach

Constraint-based model (1)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
CeBiTec, Bielefeld University (1)
China-UK-NYNU-RRES Joint Laboratory of Insect Biology, Nanyang Normal University (NYNU), Nanyang 473061, Henan, People’s Republic of China (1)
Departamento de Bioquímica y Biología Estructural, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México (UNAM) (1)
Department for Molecular and Applied Microbiology, Leibniz-Institute for Natural Product Research and Infection Biology, Hans Knöll Institute Jena, Germany (1)
Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands (1)
Instituto Colombiano de Medicina Tropical (ICMT), Colombia (1)
TUM School of Natural Sciences, Department of Bioscience, Center for Functional Protein Assemblies (CPA), Chair of Organic Chemistry II, Technical University of Munich, 85748 Garching bei München, Germany (1)
Toscana Life Sciences (1)
University of Florida, Department of Oral Biology (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Classification

fungi (2)
bacteria (2)

Study type

Transcription profiling by array (10)
Unknown experiment type (3)
RNA-seq of coding RNA (3)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)

Release Date

2022 (108)
2023 (101)
2021 (89)
2025 (83)
2024 (82)
2020 (82)
2018 (71)
2019 (59)
2015 (38)
2017 (35)
2016 (33)
2014 (32)
2013 (31)
2012 (21)
2011 (18)
2005 (14)
2026 (12)
2009 (12)
2008 (11)
2007 (8)
2006 (8)
2010 (6)
2004 (5)
1999 (2)
1998 (2)
2003 (1)
2002 (1)
2001 (1)

Previous page
1 / 110
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 110
Next page

Sort by:

Relevance

Page size

Arginine-derived polyketides are ubiquitous signals shaping cross-kingdom microbial interactions

Microbial consortia consist of a multitude of prokaryotic and eukaryotic microorganisms. Their interaction is critical for the functioning of ecosystems. Until now, there is limited knowledge about the communication signals determining the interaction between bacteria and fungi and how they influenc...

ORGANISM(S): Streptomyces iranensis

2023-06-16 | PXD033242 | Pride

RNA-seq comparison of Clostridium acetobutylicum wild-type and pks mutant under batch fermentation conditions.

The goal of this experiment is compare gene expression profiles between C. acetobutylicum wild-type and pks mutant strains to determine which genes might be under the control of self-produced polyketides. Samples for RNA-seq comparison were taken from batch fermentation cultures 26 hours post-inocul...

ORGANISM(S): Clostridium acetobutylicum

2017-09-27 | E-MTAB-6019 | biostudies-arrayexpress

Studies on the production of fungal polyketides in Aspergillus nidulans using systems biology tools

Using genetic engineering tools available for the model organism Aspergillus nidulans, we constructed two recombinant strains; one expressing the model polyketide Penicillium griseofulvum 6-methylsalicylic acid (6-MSA) polyketide synthase gene, and one expressing the 6-MSA gene and overexpressing th...

ORGANISM(S): Emericella nidulans

2009-02-27 | E-GEOD-12859 | biostudies-arrayexpress

Chemoenzymatic synthesis of fluorinated polyketides.

Not available

S-EPMC9832397 | biostudies-literature

The industrial anaerobe Clostridium acetobutylicum uses polyketides to regulate cellular differentiation.

Not available

S-EPMC5686105 | biostudies-literature

Engineered Biosynthesis of Alkyne-Tagged Polyketides by Type I PKSs.

Not available

S-EPMC7063234 | biostudies-literature

Arginine-derived polyketides are ubiquitous signals shaping cross-kingdom microbial interactions