Posttranslational modification (ptm)

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Proteomics (342)
Unknown (196)
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Genomics (38)
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Organisms

Homo sapiens (103)
Mus musculus (50)
Arabidopsis thaliana (30)
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Actinobacillus pleuropneumoniae (3)
Caenorhabditis elegans (3)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (2)
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Corynebacterium glutamicum ATCC 13032 (1)
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Felis catus (1)

Organisms

Mus musculus (7)
Homo sapiens (2)
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Arabidopsis thaliana (1)

Repository

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Disease

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Technology Type

Mass Spectrometry (96)
Shotgun proteomics (64)
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Instrument Platform

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The TLDA cards were analyzed on the Applied Biosystems 7900HT Real-Time PCR System. (1)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
G2565BA DNA microarray scanner [Agilent] (1)
GenePix 4000B [Axon Instruments] (1)
None (1)
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NextSeq 2000 (1)

Publication Date

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2011 (33)
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2019 (29)
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2012 (24)
2015 (20)
2020 (19)
2010 (13)
2018 (12)
2016 (12)
2013 (10)
2026 (9)
2008 (9)
2009 (4)
2007 (3)

UNIPROT ID/AC

4565.Traes_6BL_7799EECBB.1 (3)
4565.Traes_5DL_9E6F66306.2 (3)
A0A3B6LW21_WHEAT (3)
4565.Traes_7AL_F5534777D.1 (3)
4565.Traes_1BL_C86F8C02A.1 (3)
A0A3B6FUU8_WHEAT (3)
4565.Traes_1BL_0D5375344.1 (3)
4565.Traes_5AL_232414653.1 (3)
A0A3B6EF89_WHEAT (3)
4565.Traes_2DS_65A89094D.1 (3)
4565.Traes_7BL_09E7513CB.1 (3)
4565.Traes_1DL_34DA247531.1 (3)
4565.Traes_3B_15FC2C014.1 (3)
4565.Traes_1DS_D1B39A182.1 (3)
A0A3B6AXY6_WHEAT (3)
4565.Traes_2BS_F2A8D87C5.1 (3)
4565.Traes_2BL_E20D7B8CA1.1 (3)
4565.Traes_7DS_4E621A250.2 (3)
4565.Traes_5AL_C3F3E95BC.1 (3)
4565.Traes_6AL_934384210.1 (3)
4565.Traes_7DL_F5534777D.1 (3)
4565.Traes_4AS_F08668B5A.1 (3)
4565.Traes_7DL_CDEB2E55D.1 (3)
4565.Traes_4DL_BF24DFB52.1 (3)
4565.Traes_4DS_DB778297B.1 (3)
4565.Traes_3AL_08B0C8C4A.1 (3)
A0A3B6RFH8_WHEAT (3)
A0A3B6SMI1_WHEAT (3)
4565.Traes_6AS_99F9277FB.1 (3)
4565.Traes_4DS_030590E8C.1 (3)

ENSEMBL ID

ENSG00000170477 (20)
ENSG00000247315 (9)
ENSG00000147251 (8)
ENSG00000204131 (2)

CHEBI ID

CHEBI:14737 (1)
CHEBI:15531 (1)
CHEBI:15468 (1)
CHEBI:15346 (1)
CHEBI:16958 (1)
CHEBI:27266 (1)
CHEBI:7916 (1)
CHEBI:15351 (1)

Metabolite Name

Malonyl-coa (1)
Dephospho-CoA (1)
Acetyl-CoA (1)
Pantothenate (1)
Methionin (1)
Histidine (1)
Leucine (1)
Coenzyme A (1)
Beta-alanine (1)
Cystine (1)
Arginine (1)
Lysine (1)
Tyrosine (1)
Threonine (1)
Proline (1)
Phenylalanine (1)
Isoleucine (1)
Glutamine (1)
Glucose (1)
Aspartic acid (1)

First Public Date

2024 (5)
2026 (2)
2025 (2)
2022 (2)
2019 (2)
2020 (1)
2015 (1)
2013 (1)

Classification

bacteria (1)

Modification

N6 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (68)
ChIP-chip by tiling array (24)
RNA-seq of coding RNA (17)
ChIP-seq (15)
MicroRNA profiling by array (3)
Comparative genomic hybridization by array (2)
Other (2)
Methylation profiling by high throughput sequencing (2)
GRO-seq (1)
Unknown experiment type (1)
Cell line - One-color microarray (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Proteomic profiling by array (1)
CUT&RUN (1)
RNA-seq of non coding RNA (1)

Release Date

2011 (35)
2014 (33)
2012 (29)
2021 (28)
2020 (23)
2022 (21)
2023 (20)
2025 (18)
2024 (18)
2015 (18)
2016 (16)
2010 (14)
2018 (11)
2017 (11)
2019 (11)
2013 (9)
2008 (9)
2009 (7)
2007 (4)
2026 (2)

Lab affiliation

Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 65 Stockholm, Sweden (2)
Division of Gastroenterology and Hepatology; Shanghai Institute of Digestive Disease; NHC Key Laboratory of Digestive Diseases; State Key Laboratory for Oncogenes and Related Genes; Renji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200001, China (2)
Associate professor, Department of Chemistry, Ulsan National Institute of Science and Technology (UNIST) (2)
Institute of Marine Sciences, Guangdong Provincial Key Laboratory of Marine Biotechnology and STU-UNIVPM Joint Algal Research Center, College of Sciences, Shantou University, Shantou, Guangdong, China; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, Guangdong, 515063, China. (1)
Chuna Choudahry University of Copenhagen Center for Protein Research Blegdamsvej 3B, 6.1 DK-2200 Copenhagen N Denmark (1)
Department of Otolaryngology, Head and Neck Surgery, Children’s Hospital Capital Institute of Paediatrics (1)
Proteomics Service CIC bioGUNE, Derio, Spain (1)
Key Laboratory of Chinese Ministry of Agriculture for Nuclear-Agricultural Sciences, Institute of Nuclear-Agricultural Sciences, Zhejiang University, China (1)
Institute of Plant Biology and Biotechnology University of Muenster Schlossplatz 7 48149 Muenster Germany (1)
Key Laboratory of Animal Infectious Diseases in Northeast China, Ministry of Education; Key Laboratory of Zoonosis, Shenyang Agricultural University, 120 Dongling Road, Shenyang 110166, China. (1)
State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Beijing 100101, China (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Fakultet for medisin og helsevitenskap geir.slupphaug@ntnu.no 72573076 91825455 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 (1)
Optys Tech Corporation (1)
Department of Chemistry, University of Michigan, Ann Arbor, MI, United States (1)
Institute of Dendrology Polish Academy of Sciences, Parkowa 5, 62-035 Kórnik, Poland (1)
Scientific Center, Shandong Provincial Hospital Affiliated to Shandong University, 324 Jingwu Road, Jinan 250021, Shandong, P.R. China (1)
University/Hospital: the Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital) Street Name & Number: No. 1017, North of Dongmen Road, Shenzhen City, Guangdong Province 518020, China (1)
College of Life and Health Sciences, Northeastern University, Shenyang, China (1)
Neuroscience Discovery AbbVie Deutschland GmbH&Co. KG Knollstr. 50 67061 Ludwigshafen am Rhein Germany (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
Hainan Normal University (1)
College of Agronomy, Shandong Agricultural University, Tai’an, China (1)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
National Laboratory of Biosciences (LNBio/CNPEM) (1)
Dr Madathiparambil G. Madanan, Scientist E, Indian Council of Medical Research, Regional Medical Research Centre, Dollygunj, Port Blair - 744 103, Andaman & Nicobar Islands,INDIA. Phone: Office: +91-3192-251158 Cell: +91-9434284576 (lab head) (1)
Laboratory of Protein Mass Spectrometry, Faculty of Biotechnology, University of Wroclaw, Poland (1)
Institute of Molecular Biology (IMB), Germany (1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
University of Copenhagen The Novo Nordisk Foundation Center for Protein Research Blegdamsvej 3B, 6.1 DK-2200 Copenhagen N Denmark (1)

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Posttranslational modification analysis of Histone H3t

Comprehensive posttranslational modifications in the testis-specific histone variant H3t protein validated in tagged knock-in mice.

ORGANISM(S): Mus Musculus (mouse)

2024-09-13 | PXD052428 | JPOST Repository

Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

We report the identification of 67 previously undescribed histone modifications, increasing the current number of known histone marks by about 70%. We further investigated one of the marks, lysine crotonylation (Kcr), confirming that it represents an evolutionarily-conserved histone posttranslationa...

ORGANISM(S): Mus musculus

2011-10-06 | E-GEOD-32663 | biostudies-arrayexpress

How post-translational modification of nitrogenase is circumvented in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively

Characterization of post-translational modification of nitrogenase in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively. To characterize the effect of yeast extract as nitrogen source on gene expression under nitrogen fixing conditions, expression profiles of wild-type cell...

ORGANISM(S): Rhodopseudomonas palustris

2012-03-15 | E-GEOD-32292 | biostudies-arrayexpress

Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - frontal gyrus

To elucidate the role of Tau isoforms and PTM stoichiometry in Alzheimer’s disease (AD), we generated a high resolution quantitative proteomic map of 88 PTMs on multiple isoforms of Tau isolated from the post-mortem human tissue from 49 AD and 42 control subjects. While Tau PTM maps reveal heterogen...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-18 | MSV000088407 | MassIVE

Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - angular gyrus

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-18 | MSV000088406 | MassIVE

Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - MC1-isolated Tau

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-18 | MSV000088408 | MassIVE

Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - high/low molecular weight tau

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-17 | MSV000088405 | MassIVE

Quantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - frontal gyrus (sarkosyl soluble)

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-11-18 | MSV000088409 | MassIVE

An Integrative SP3 Workflow for Multi-PTM Proteomics Profiling

Global proteomic, redox proteomic, and phosphoproteomic data from mouse C10 epithelial cells and skeletal muscle tissue, no treatments used for method development experiments using these biological sytems. Global proteomic, redox proteomic, phosphoproteomic, and acetylomic data from mouse Beta-TC-6 ...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-07-06 | MSV000095264 | MassIVE

5HT - Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3

we provide evidence for a new class of histone posttranslational modification (PTM): serotonylation.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2023-12-04 | MSV000093567 | MassIVE

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