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TranscriptomicsPBMC response to B. pertussis filamentous hemagglutinin stimulation in vitro
Filamentous hemagglutinin (FHA), Bordetella pertussis' key adhesin, is both present at the cell surface and released in the extracellular milieu. To comprehend the role free FHA plays in the pathogenic process, we analyzed the global transcriptional changes in human peripheral blood mononuclear cell...
ORGANISM(S): Homo sapiens 
2008-10-29 | E-GEOD-8802 | biostudies-arrayexpress
TranscriptomicsRhodobacter sphaeroides respiration and photosynthesis
This series contains two subsets of samples not being directly compared. The two subsets are: GSE2145: 30% O2 vs PS 10W/m2 GSE2146: CT01 vs wild-type at 3% O2 Below results represent the K-means (K=4) clustering analysis using GeneSpring software. The list contains genes/ORFs contained in each of ...
ORGANISM(S): Rhodobacter sphaeroides 
2005-04-01 | E-GEOD-2150 | biostudies-arrayexpress
GenomicsPowerful Identification of Cis-regulatory SNPs in Human Primary Monocytes Using Allele-Specific Gene Expression
The aim of this study was to compare the power to detect associations between SNPs using cis-eQTL mapping and ASE analysis (allele specific expression).
EGAS00000000119 | EGA
Transcriptomics30% O2 vs PS 10W/m2
Comparison of wild-type (2.4.1) R. sphaeroides gene expression in 30% O2 aerobic respiration vs. photosynthesis 10W/m2 light, to identify candidate photosynthesis genes. RNA preparation: pellet cells from exponential phase cultures using 5% phenol in ethanol stop solution; lysozyme + SDS to lyse; p...
ORGANISM(S): Rhodobacter sphaeroides 
2010-06-10 | E-GEOD-2145 | biostudies-arrayexpress
TranscriptomicsCT01 vs wild-type at 3% O2
Comparison of wild-type (2.4.1) and CT01 (contains an omega Spr/Smr insertion in RSP4157) gene expression; growth condition is (3% O2 + 96%N2 + 1%CO2) semi-aerobic growth in the dark. Manuscript in preparation. The below normalized data was generated using GeneSpring software with the following se...
ORGANISM(S): Rhodobacter sphaeroides 
2010-06-10 | E-GEOD-2146 | biostudies-arrayexpress
TranscriptomicsResponse of Rhodopirellula baltica to heat shock
Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 37°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C). Tim...
ORGANISM(S): Rhodopirellula baltica 
2009-09-09 | E-GEOD-13769 | biostudies-arrayexpress
TranscriptomicsResponse of Rhodopirellula baltica to cold shock
Expression profiling of the stress response of the marine Planctomycete Rhodopirellula baltica after a temperature up-shift. R. baltica cultures were grown at 28°C and then shifted to 6°C. Samples were taken after 10, 20, 40, 60 and 300min and compared with cultures before the up-shift (28°C). Re...
ORGANISM(S): Rhodopirellula baltica 
2009-09-09 | E-GEOD-13856 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of procyclic Trypanosoma brucei cultured at 27oC or under heat shock stress conditions at 41oC
Procyclic trypanosomes (strain 427 lister) were grown in culture under standard conditions at 27ºC in SDM79 medium with 10% foetal bovine serume (Brun and Schnenberger, 1979), in a gazed incubator (5% CO2). Logarithmically growing procyclic cells (at about 5*10^6 cells/ml, at 27°C) were added to o...
ORGANISM(S): Trypanosoma brucei 
2008-09-10 | E-MEXP-1476 | biostudies-arrayexpress
ProteomicsMulti-OMICS data of a Hyper IgD Syndrome family
The aim of this study was to understand why two siblings carrying both the same homozygous causal mutation for the auto-inflammatory disease hyper IgD show opposite phenotypes, i.e. the first being asymptomatic, the second presenting all classical characteristics of the disease. As compared to studi...
ORGANISM(S): Homo sapiens (Human) 
2019-10-24 | PXD009063 | Pride
Proteogenomics analysis - differential analysis - hyper igd syndrome - single amino acid variant characterization 
UnknownNLRP3 Inflammasome Inhibition by the Novel Bispecific Antibody InflamAb Attenuates Atherosclerosis in Apolipoprotein E-Deficient Mice.
Not available
S-EPMC12230472 | biostudies-literature
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