Propagation - OmicsDI

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Vitis x champinii x Vitis riparia (1)

Organisms

Homo sapiens (228)
Mus musculus (197)
Arabidopsis thaliana (23)
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Danio rerio (7)
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unidentified (3)
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Metarhizium robertsii (2)
Nelumbo nucifera (2)
Plasmodium falciparum (2)
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Malus domestica (2)
synthetic construct (2)
Solanum tuberosum (2)
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Alpha 1-antitrypsin deficiency (1)
Malaria (1)
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Technology Type

Mass Spectrometry (153)
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Data-dependent acquisition (25)
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Illumina HiSeq 2000, Illumina MiSeq (1)
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MSE (1)
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Instrument Platform

Illumina HiSeq 2000 (10)
Q Exactive (6)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (5)
NextSeq 500 (5)
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LTQ Orbitrap Elite (3)
G2505B DNA microarray scanner (2)
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Illumina HiSeq 4000 (2)
6520A Quadrupole Time-of-Flight LC/MS (2)
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Rneasy Plant Mini Kit (Qiagen) (1)
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- (1)
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Instrument (1)
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Publication Date

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2010 (32)
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2005 (14)
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2007 (4)

UNIPROT ID/AC

P09560 (2)
Q90W58 (2)
Q05116 (2)
P26696 (2)
P12351 (1)
P40441 (1)
P25601 (1)
P26188 (1)
P14771 (1)
P38830 (1)
P14164 (1)
P50083 (1)
P47098 (1)
P40587 (1)
P39546 (1)
P32896 (1)
P36039 (1)
P42844 (1)
Q03180 (1)
P12294 (1)
Q12088 (1)
O13527 (1)
P48559 (1)
P25561 (1)
P40068 (1)
P36130 (1)
P50273 (1)
P36004 (1)
P40033 (1)
Q06053 (1)

ENSEMBL ID

NewID (1)

CHEBI ID

CHEBI:15422 (6)
CHEBI:16247 (2)
CHEBI:15848 (1)
CHEBI:15863 (1)
CHEBI:15705 (1)
CHEBI:17118 (1)
CHEBI:32988 (1)
CHEBI:16468 (1)
CHEBI:17478 (1)
CHEBI:15914 (1)
CHEBI:4280 (1)
CHEBI:28401 (1)
CHEBI:18338 (1)
CHEBI:28260 (1)
CHEBI:18290 (1)
CHEBI:33199 (1)
CHEBI:35910 (1)
CHEBI:16385 (1)
CHEBI:2405 (1)
CHEBI:17106 (1)
CHEBI:16211 (1)
CHEBI:18371 (1)
CHEBI:15678 (1)
CHEBI:15689 (1)
CHEBI:17667 (1)
CHEBI:36241 (1)
CHEBI:17530 (1)
CHEBI:2070 (1)
CHEBI:18416 (1)
CHEBI:16862 (1)

Metabolite Name

UDP-glucose (4)
Methionine (4)
Citrate (4)
ADP (4)
Xanthine (4)
Inosine (4)
Agnuside (3)
Lusitanicoside (3)
Glutathione (3)
Sn-Glycero-3-phosphocholine (3)
Ascorbate (3)
Tris(2-butoxyethyl) phosphate (3)
Hymenoxon (3)
Cholic acid (3)
Serine (3)
Isoleucine (3)
Glutamine (3)
Fumarate (3)
AMP (3)
Pyruvate (3)
Succinate (3)
Adenine (3)
Guanine (3)
Lactate (3)
Glycine (3)
2-O-beta-D-Glucopyranuronosyl-D-mannose (2)
Bis(5-hydroxynoracronycine) (2)
Pi-Methylhistidine (2)
Isopropanol (2)
Dibutyl phthalate (DBP) (2)

First Public Date

2025 (139)
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2014 (107)
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2022 (88)
2021 (83)
2020 (75)
2018 (62)
2019 (56)
2017 (44)
2015 (33)
2013 (27)
2016 (15)
2011 (1)

Modelling Approach

Ordinary differential equation model (20)

Lab affiliation

Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (4)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (3)
Faculty of Chemistry and Center for Synthetic Microbiology (SYNMIKRO) Head of the Core-Facility for Mass Spectrometry Marburg University Hans-Meerwein-Str. 4 35032 Marburg GERMANY (2)
Institute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich (2)
Center for Biotechnology and Department of Botany, Federal University of Rio Grande do Sul, Porto Alegre, P.O. Box 15005, 91501-970, Brazil (2)
DKFZ Heidelberg (2)
Institute for Clinical Biochemistry and Pathobiochemistry German Diabetes Center (DDZ) Leibniz Center for Diabetes Research at Heinrich Heine University Düsseldorf Auf´m Hennekamp 65 40225 Düsseldorf Germany (2)
School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland (2)
Laboratório de Biotecnologia, Centro de Biociências e Biotecnologia (CBB), Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF), Av. Alberto Lamego, Campos dos Goytacazes, RJ, Brazil. Unidade de Biologia Integrativa, Setor de Genômica e Proteômica, UENF, Campos dos Goytacazes, RJ, Brazil. (2)
College of Animal Science and Technology, Yangzhou University, Yangzhou 225009, China (2)
Biomedical Center, Chromatin Proteomics Group, Department of Molecular Biology, Faculty of Medicine, Ludwig-Maximilians-Universität München, Großhaderner Strasse 9, 82152 Planegg-Martinsried, Germany. (1)
Science for Life Laboratory, School of Biotechnology, KTH – Royal Institute of Technology, Stockholm, Sweden. (1)
The State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei, China (1)
MED—Mediterranean Institute for Agriculture, Environment and Development & CHANGE—Global Change and Sustainability Institute, School of Science and Technology, University of Évora, Pólo da Mitra, Ap. 94, 7002-554 Évora, Portugal (1)
Department of Cellular & Molecular Physiology, Yale University School of Medicine, New Haven, CT 06520, USA Systems Biology Institute, Yale University, West Haven, CT 06516, USA (1)
Center for Network Systems Biology, Boston University (1)
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, 94720, USA (1)
CEITEC Masaryk University (1)
Department of Biochemistry and Molecular Genetics, University of Colorado, Aurora, CO 80045 (1)
Institute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, Taiwan (1)
Target Discovery Institute Nuffield Department of Medicine University of Oxford Roosevelt Drive Oxford OX3 7FZ UK Tel: +44 (0) 1865 612 921 Email: benedikt.kessler@ndm.ox.ac.uk Website: www.tdi.ox.ac.uk/mass-spectrometry (1)
Cambridge Institute of Therapeutic Immunology and Infectious Diseases, Department of Medicine, University of Cambridge, (1)
Department of Pharmacology & Toxicology (1)
Department of Cell Biology and Molecular Genetics University of Maryland (1)
Departament of Byossistems, KULeuven, Leuven 3000, Belgium (1)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden, 2-Science for Life Laboratory, Stockholm, Sweden (1)
1-Tyrolean Cancer Research Institute (TKFI), Innrain 66, A-6020 Innsbruck, Austria 2-Institute of Molecular Biology and Center for Molecular Biosciences, University of Innsbruck, Technikerstrasse 25, A-6020 Innsbruck, Austria. (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany (1)
Mass Spectrometry Laboratory, Target Discovery Institute, University of Oxford, The Old Road Campus, Oxford, OX3 7FZ, UK (1)

IsPrivate

False (21)

Model Flag

Non Kinetic (2)

Classification

bacteria (22)
viruses (12)
fungi (5)
protozoa (4)

Modification

N6 (4)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (172)
RNA-seq of coding RNA (45)
ChIP-seq (19)
RNA-seq of non coding RNA (9)
Other (7)
ChIP-chip by array (6)
Comparative genomic hybridization by array (6)
ChIP-chip by tiling array (5)
Plant - High-throughput sequencing (5)
Methylation profiling by array (5)
DNA-seq (3)
Proteomic profiling by array (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
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RNA-seq of coding RNA from single cells (2)
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RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

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2013 (312)
2012 (256)
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2007 (91)
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2004 (31)
2003 (23)
2001 (21)
2002 (20)
1999 (9)
1998 (7)
2000 (4)
1997 (2)

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Sexual Propagation Enhances Tea Quality Through Rhizosphere Microbiome Assembly and Metabolic Reprogramming in Camellia sinensis

Tea quality is primarily determined by the accumulation of specialized metabolites in fresh leaves; however, the mechanisms by which propagation methods influence tea qual-ity through plant–soil–microbiome interactions remain poorly understood. Here, sexually propagated (SR) and asexually propagated...

2026-08-05 | MTBLS15257 | MetaboLights

Metabolic profiling of Rafflesia-infected Tetrastigma and applications for propagation

Not available

ORGANISM(S): Tetrastigma loheri

ST001854 | MetabolomicsWorkbench

Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords

Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. Verma A, Makadia H, Hoek JB, Ogunna...

2024-09-02 | BIOMD0000000834 | BioModels

AMFc propagation cycles

PRJEB71400 | ENA

Transcription profiling of lager brewing yeast strain during industrial propagation and fermentation

Commercial brewing yeast strains are exposed to a number of potential stresses including oxidative stress. The aim of this investigation was to measure the physiological and transcriptional changes of yeast cells during full-scale industrial brewing processes with a view to determining the environme...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-16 | E-GEOD-9423 | biostudies-arrayexpress

Differential yeast gene transcription during brewery propagation

The aim of this study was to determine the transcriptomic response of Saccharomyces pastorianus to environmental change during brewery propagation. Utilization of amino acids and fermentable carbohydrates during full-scale brewery propagation was compared to the simultaneous changes occurring in the...

ORGANISM(S): Saccharomyces pastorianus

2009-06-02 | E-GEOD-16376 | biostudies-arrayexpress

A DNA polymerase ? accessory protein, Mcl1, is required for propagation of centromere structures in fission yeast

Specialized chromatin exists at centromeres and must be precisely transmitted during DNA replication. The mechanisms involved in the propagation of these structures remain elusive. Fission yeast centromeres are composed of two chromatin domains: the central CENP-ACnp1 kinetochore domain and flanking...

ORGANISM(S): Schizosaccharomyces pombe

2008-07-22 | E-GEOD-11102 | biostudies-arrayexpress

Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Gastrodia elata Blume (Orchidaceae) is an important Chinese medicine with several functional components. In the life cycle of G. elata, the orchid develops a symbiotic relationship with two compatible mycorrhizal fungi Mycena spp. and Armillaria mellea during seed germination to form vegetative prop...

ORGANISM(S): Gastrodia elata

2016-08-23 | E-GEOD-73633 | biostudies-arrayexpress

The formation and propagation of human Robertsonian chromosomes

PRJNA1222001 | ENA

The formation and propagation of human Robertsonian chromosomes

PRJNA1222000 | ENA

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