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MetabolomicsChilling-induced restructuring of seed-borne endophytes enhances early cold tolerance and microbiome assembly in common vetch
Chilling stress constitutes a major abiotic constraint on plant growth and productivity. Although plants mobilize well-characterized physiological and transcriptional acclimation mechanisms, the integrative roles of root-associated microbiomes and root exudate chemistry in chilling tolerance, partic...
2026-04-21 | MTBLS14339 | MetaboLights
GenomicsGenome-wide binding map of the HIV Tat protein to the human genome (ChIP-Seq)
The HIV-1 Trans-Activator of Transcription (Tat) protein binds to multiple host cellular factors and greatly enhances the level of transcription of the HIV genome. Here, we report the genome-wide binding map of Tat to the human genome in Jurkat T cells (Jurkat-Tat cells) using chromatin immunopreci...
ORGANISM(S): Homo sapiens 
2011-11-06 | E-GEOD-30738 | biostudies-arrayexpress
ProteomicsA multi-scale map of protein assemblies in the DNA damage response
The DNA damage response (DDR) ensures error-free genome replication and transcription and is disrupted in numerous pathologies including cancer, inflammation and aging1–5. An ongoing challenge is to determine the proteins orchestrating DDR and their organization into protein assemblies and complexes...
ORGANISM(S): Homo sapiens (Human) 
2024-07-03 | PXD028064 | Pride
Human Protein assembly map Dna damage response 
TranscriptomicsSnapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
Ribosome assembly in eukaryotes involves the activity of hundreds of assembly factors that direct the hierarchical assembly of ribosomal proteins and numerous ribosomal RNA folding steps. However, detailed insights into the function of assembly factors and ribosomal RNA folding events are lacking. T...
ORGANISM(S): Saccharomyces cerevisiae 
2014-11-14 | E-GEOD-52878 | biostudies-arrayexpress
ProteomicsLandscape of protein-protein-interactions during hepatitis C virus assembly and release
Assembly of infectious hepatitis C virus (HCV) particles requires multiple cellular proteins including for instance apolipoprotein E (ApoE). To describe these protein-protein-interactions, we performed an affinity purification mass spectrometry screen (AP-MS) of HCV infected cells. We used functiona...
ORGANISM(S): Homo sapiens (Human) 
2023-12-18 | PXD046941 | Pride
Virus host interaction Ap-ms Hepatitis c virus Virus assembly Hcv 
TranscriptomicsA high-resolution map of active promoters in the human genome
Our ability to understand the control logic embedded in the human genome is limited by a lack of accurate information of the promoter sequences for most genes. Promoters are a unique class of control sequences, serving as the binding sites for both sequence-specific factors and the general transcri...
ORGANISM(S): Homo sapiens 
2010-07-01 | E-GEOD-2672 | biostudies-arrayexpress
UnknownHigh-resolution linkage map and chromosome-scale genome assembly for cassava (Manihot esculenta Crantz) from 10 populations.
Not available
S-EPMC4291464 | biostudies-literature
TranscriptomicsNucleosome Mapping in S. pombe Centromeres
A key element for defining the centromere identity is the incorporation of a specific histone H3, CENP-A, known as Cnp1p in S. pombe. Previous studies have suggested that functional S. pombe centromeres lack nucleosome arrays and may involve chromatin remodeling as a key step of kinetochore assembl...
ORGANISM(S): Schizosaccharomyces pombe 
2008-05-30 | E-GEOD-10742 | biostudies-arrayexpress
ProteomicsA multi-scale map of protein assemblies in the DNA damage response
The DNA damage response (DDR) ensures error-free genome replication and transcription and is disrupted in numerous pathologies including cancer, inflammation and aging1–5. An ongoing challenge is to determine the proteins orchestrating DDR and their organization into protein assemblies and complexes...
ORGANISM(S): Homo sapiens (Human) 
2024-07-03 | PXD037494 | Pride
Dna repair Dna damage response Protein assembly 
UnknownA Protein Interaction Map of the Kalimantacin Biosynthesis Assembly Line.
Not available
S-EPMC5089993 | biostudies-literature
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