Protein localisation

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Transcriptomics (1165)
Unknown (1108)
Genomics (504)
Proteomics (479)
Other (26)
Metabolomics (20)
Multiomics (3)
Models (2)
Methylation profiling (1)

Organisms

Homo sapiens (491)
Mus musculus (370)
Caenorhabditis elegans (303)
Saccharomyces cerevisiae (119)
Drosophila melanogaster (68)
Arabidopsis thaliana (64)
Rattus norvegicus (38)
Schizosaccharomyces pombe (24)
Danio rerio (9)
Bos taurus (7)
Gallus gallus (7)
Xenopus laevis (6)
Vibrio cholerae (6)
Zea mays (6)
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Sus scrofa (5)
Plasmodium falciparum (5)
Escherichia coli K-12 (4)
Allochromatium vinosum DSM 180 (3)
Oryza sativa Indica Group (3)
Oryza sativa (3)
Bacillus subtilis (3)
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Saccharomyces cerevisiae W303 (2)
Phaeodactylum tricornutum (2)
Plasmodium berghei (2)
Entamoeba histolytica (2)
Neisseria meningitidis (2)
Plasmodium falciparum 3D7 (2)
Salmo salar (2)

Organisms

Homo sapiens (39)
Mus musculus (14)
Saccharomyces cerevisiae (4)
Schizosaccharomyces pombe (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Rattus norvegicus (2)
Plasmodium falciparum (2)
Theileria parva (1)
Toxoplasma gondii RH (1)
Saccharomyces cerevisiae BY4741 (1)
Escherichia coli (1)
Pseudomonas aeruginosa (1)
Bos taurus (1)
Gallus gallus (1)

Repository

biostudies-arrayexpress (1501)
pride (246)
MassIVE (154)
ENA (100)
geo (70)
jPOST (46)
MetaboLights (20)
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iProX (14)
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PAXDB (10)
PeptideAtlas (8)
BioModels (1)
Cell Collective (1)

Tissue

Cell culture (67)
Epithelial cell (17)
Permanent cell line cell (14)
Brain (11)
Fibroblast (9)
Blood (6)
Embryonic stem cell (6)
HeLa cell (6)
Liver (6)
Leaf (5)
Plant cell (5)
Stem cell (5)
B cell (4)
Primary cell (4)
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Hepatocyte (3)
Lung (3)
Pancreas (3)
T cell (3)
Testis (3)
Whole body (3)
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Colon (2)
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Disease

Not Available (15)
Disease free (10)
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Colorectal cancer (1)
Multiple congenital malformation (1)
Non-diabetic (1)
Acute Myeloid Leukemia (1)
Unaffected (1)
Hypertensive (1)
Glioblastoma (1)
None (1)
Adenocarcinoma (1)
Central nervous system cancer (1)
Breast Carcinoma (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (246)
Shotgun proteomics (117)
Bottom-up proteomics (61)
Affinity purification coupled with mass spectrometry proteomics (49)
Data-dependent acquisition (31)
Gel-based experiment (22)
Data-independent acquisition (19)
Mass spectrometry (18)
SWATH MS (12)
Chemical cross-linking coupled with mass spectrometry proteomics (6)
SRM/MRM (3)
Top-down proteomics (3)
Mass spectrometry assay (2)
DiaPASEF (2)
ILLUMINA, Illumina HiSeq 2500 (1)
Affinity proteomics (1)
HDMSE (1)

Instrument Platform

NextSeq 500 (34)
Illumina NovaSeq 6000 (20)
Illumina HiSeq 2000 (18)
Illumina HiSeq 4000 (17)
Illumina HiSeq 2500 (13)
Illumina Genome Analyzer IIx (5)
Illumina MiSeq (4)
NextSeq 2000 (3)
NextSeq 550 (3)
Maxwell RSC Instrument (2)
Bio-Rad CFX96 Real-time System (2)
Conviron controlled environment chamber (2)
Affymetrix GeneChip Scanner 3000 7G (2)
Agilent G2565AA and G2565BA Microarray Scanner (2)
Illumina Genome Analyzer II (2)
MinION (2)
Coulter Automated Workstation Biomek i7 Hybrid (1)
RNeasy 96-well plate kit (1)
NextSeq 500, 75 bp single end lane (1)
Nikon Eclipse Ti2 with brightfield and fluorescence capacity (TRITC) (1)
Leica Biosystems Cryostat (1)
BD LSRFortessa (1)
MACS Whole Skin Dissociation Kit (1)
Cutadapt, STAR (1)
TruSeq Stranded mRNA Sample Prep Kit (Illumina) (1)
BD InFlux Cytometer (Becton-Dickinson) (1)
Covaris S220 (1)
ScanArray 4000 [PerkinElmer] (1)
GeneChip Scanner 3000 [Affymetrix] (1)
Jencons Millennium CO2 Incubator (1)

Publication Date

2013 (298)
2010 (217)
2014 (158)
2012 (158)
2011 (154)
2015 (128)
2016 (127)
2024 (100)
2023 (88)
2008 (86)
2025 (84)
2020 (72)
2022 (57)
2009 (57)
2021 (50)
2019 (49)
2026 (41)
2018 (39)
2017 (26)
2007 (26)
2006 (26)
2005 (9)
2004 (2)
2003 (1)

UNIPROT ID/AC

10090.ENSMUSP00000048857 (6)
10090.ENSMUSP00000079727 (6)
10090.ENSMUSP00000080088 (6)
10090.ENSMUSP00000083973 (6)
10090.ENSMUSP00000088281 (6)
10090.ENSMUSP00000088285 (6)
10090.ENSMUSP00000089293 (6)
10090.ENSMUSP00000089300 (6)
10090.ENSMUSP00000089335 (6)
10090.ENSMUSP00000089339 (6)
10090.ENSMUSP00000089345 (6)
10090.ENSMUSP00000089346 (6)
10090.ENSMUSP00000090897 (6)
10090.ENSMUSP00000095287 (6)
10090.ENSMUSP00000095794 (6)
10090.ENSMUSP00000100034 (6)
10090.ENSMUSP00000100581 (6)
10090.ENSMUSP00000100738 (6)
10090.ENSMUSP00000105709 (6)
10090.ENSMUSP00000113068 (6)
10090.ENSMUSP00000123410 (6)
10090.ENSMUSP00000124509 (6)
10090.ENSMUSP00000136358 (6)
1433E_MOUSE (6)
2AAA_MOUSE (6)
3HIDH_MOUSE (6)
6PGL_MOUSE (6)
A1AT1_MOUSE (6)
AATC_MOUSE (6)
AATM_MOUSE (6)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000204131 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000176092 (1)

CHEBI ID

CHEBI:16610 (5)
CHEBI:18012 (5)
CHEBI:32816 (5)
CHEBI:30769 (5)
CHEBI:33942 (4)
CHEBI:30805 (4)
CHEBI:16113 (4)
CHEBI:17234 (4)
CHEBI:29864 (4)
CHEBI:17562 (4)
CHEBI:25017 (4)
CHEBI:15428 (4)
CHEBI:17148 (4)
CHEBI:15741 (4)
CHEBI:6650 (4)
CHEBI:28044 (4)
CHEBI:30754 (3)
CHEBI:17992 (3)
CHEBI:26984 (3)
CHEBI:33508 (3)
CHEBI:17822 (3)
CHEBI:16927 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:30865 (3)
CHEBI:16040 (3)
CHEBI:22660 (3)
CHEBI:22653 (3)
CHEBI:18186 (3)

Metabolite Name

Spermidine (4)
Leucine (3)
Mannitol (3)
Putrescine (3)
Succinic acid (3)
Fumaric acid (3)
Isocitric acid (3)
Lysine (3)
Tyrosine (3)
Proline (3)
Phenylalanine (3)
Isoleucine (3)
Glutamine (3)
Glucose (3)
Aspartic acid (3)
Tagatose (2)
Pyruvic acid (2)
1-Hexadecanol (2)
Oxalacetic acid (2)
Cholesterol (2)
Ribitol (2)
Ribose (2)
Galactitol (2)
Triacylglycerol (2)
Diacylglycerol (2)
Pyruvic acid (2)
Norepinephrine (2)
Threonic acid (2)
2-Ketobutyric acid (2)
4-Hydroxyphenylpyruvic acid (2)

First Public Date

2024 (20)
2026 (18)
2025 (15)
2022 (9)
2014 (9)
2023 (7)
2020 (5)
2019 (4)
2016 (4)
2021 (3)
2018 (2)
2013 (2)
2017 (1)
2015 (1)

Modelling Approach

Generalized logical model (1)

Lab affiliation

CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (6)
Department of Molecular Ecology MPI for Marine Microbiology Celsiusstr. 1 D-28359 Bremen Germany (5)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (3)
Department of Microbiology and Molecular Medicine, CMU, University of Geneva, Geneva, Switzerland (3)
University of Edinburgh (3)
Cancer Research UK Cambridge Institute University of Cambridge Li Ka Shing Centre Cambridge CB2 0RE United Kingdom (2)
Crick-GSK LinkLabs, UK (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 82 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences (RIMLS), Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands Division of Molecular Genetics, The Netherlands Cancer Institute, 1066CX, Amsterdam, The Netherlands (2)
Department of Veterinary Biosciences, Melbourne Veterinary School, The University of Melbourne, Parkville, Victoria 3010, Australia (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
Functional Proteomics, ICR (2)
Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 3BX, United Kingdom (2)
Lanzhou Veterinary Research Institute (2)
MRC Toxicology Unit, University of Cambridge (2)
Max Delbrueck Center for Molecular Medicine (2)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales 2052, Australia (2)
The University of Melbourne (2)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1 Population Health and Immunity Division, The Walter and Eliza Hall Institute of Medical Research, Melbourne, VIC, Australia Department of Veterinary Biosciences, Melbourne Veterinary School, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, VIC, Australia (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
Associate Professor, University College Dublin, School of Biomolecular and Biomedical Science, Conway Institute Belfield Dublin 4 (1)
Babraham Institute, Cambridge, UK (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bernhard Nocht Institute for Tropical Medicine (1)
Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany. (1)
Biomedical & Life Sciences, Lancaster University UK (1)
Biomedical & Life Sciences, Lancaster University, UK. (1)
CEITEC-Central European Institute of Technology, Masaryk University, Brno CZ-62500, Czech Republic (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)

IsPrivate

False (1)

Classification

protozoa (4)
bacteria (2)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
N6 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (520)
ChIP-seq (366)
ChIP-chip by tiling array (196)
RNA-seq of coding RNA (182)
Other (44)
ChIP-chip by array (33)
Unknown experiment type (28)
RNA-seq of non coding RNA (26)
Methylation profiling by array (12)
Methylation profiling by high throughput sequencing (12)
Comparative genomic hybridization by array (8)
RIP-chip by array (5)
Cell line - High-throughput sequencing (5)
Transcription profiling by tiling array (5)
RNAi profiling by array (5)
High-throughput sequencing (4)
Animal - High-throughput sequencing (4)
CLIP-seq (4)
MicroRNA profiling by array (4)
Genotyping by array (3)
Spatial transcriptomics by high-throughput sequencing (3)
ATAC-seq (3)
DNA-seq (3)
Genotyping by high throughput sequencing (3)
Transcription profiling by SAGE (2)
Translation profiling (2)
Capture-C (2)
Transcription profiling by RT-PCR (2)
Bisulfite-seq (2)
CUT&RUN (2)

Release Date

2013 (335)
2010 (242)
2014 (198)
2012 (194)
2011 (184)
2015 (174)
2016 (145)
2022 (112)
2023 (108)
2025 (103)
2008 (103)
2019 (95)
2024 (93)
2021 (88)
2020 (88)
2018 (86)
2017 (73)
2009 (73)
2007 (38)
2006 (25)
2026 (19)
2005 (15)
2004 (8)
2003 (5)
2000 (2)
2002 (1)
2001 (1)

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Protein localisation during chromatin regulator depletion

PRJNA967720 | ENA

Protein localisation during chromatin regulator depletion

Using ChECseq, we measured the effect of histone regulator depletion on chromatin protein localisation

ORGANISM(S): Saccharomyces cerevisiae

2023-06-29 | GSE231809 | GEO

Unveiling the role of RAB13 localisation in angiogenesis

PRJNA649779 | ENA

Regulators of histone exchange and protein localisation during chromatin regulator depletion

PRJNA967717 | ENA

Expression analysis of the Theileria parva subtelomere-encoded variable secreted protein gene family

The protozoan parasite Theileria parva infects and transforms bovine lymphocytes inducing uncontrolled proliferation. The transforming schizont resides free in the host cell cytoplasm and it is assumed that proteins released from the parasite contribute to host cell transformation and parasite pers...

ORGANISM(S): Theileria parva

2010-05-15 | E-GEOD-14093 | biostudies-arrayexpress

A system-wide quantitative map of RNA and protein subcellular localisation dynamics

PRJEB49479 | ENA

SubCellBarcode: Scalable proteome-wide mapping of protein localization and relocalization

We have devised a simple and robust LC-MS/MS compatible protocol for subcellular protein localization studies. Here, we combine it with in depth proteome profiling and utilize the resulting dataset to predict the subcellular localization of more than 12000 proteins in 5 human cancer cell lines. The ...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-02-17 | MSV000086899 | MassIVE

In-Pero: Exploiting Deep Learning Embeddings of Protein Sequences to Predict the Localisation of Peroxisomal Proteins.

Not available

S-EPMC8232616 | biostudies-literature

Single-cell subcellular protein localisation using novel ensembles of diverse deep architectures.

Not available

S-EPMC10163260 | biostudies-literature

Ultrastructural localisation of protein interactions using conditionally stable nanobodies.

Not available

S-EPMC5903671 | biostudies-literature