Proteo - OmicsDI

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Proteomics (141)
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Technology Type

Mass Spectrometry (122)
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Instrument Platform

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UNIPROT ID/AC

3MG2_ECOLI (2)
3PASE_ECOLI (2)
511145.b2088 (2)
511145.b2394 (2)
511145.b3505 (2)
5DNU_ECOLI (2)
5FCL_ECOLI (2)
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ACP_ECOLI (2)
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ACRB_ECOLI (2)

CHEBI ID

CHEBI:182784 (2)
CHEBI:68467 (2)
CHEBI:17234 (2)
CHEBI:15676 (2)
CHEBI:16870 (2)
CHEBI:15741 (2)
CHEBI:6650 (2)
CHEBI:27468 (2)
CHEBI:17509 (2)
CHEBI:73024 (2)
CHEBI:17012 (2)
CHEBI:15891 (2)
CHEBI:18050 (2)
CHEBI:16359 (2)
CHEBI:80774 (2)
CHEBI:43355 (2)
CHEBI:16015 (2)
CHEBI:16027 (2)
CHEBI:78320 (2)
CHEBI:30915 (2)
CHEBI:16737 (2)
CHEBI:16919 (2)
CHEBI:17596 (2)
CHEBI:28865 (2)
CHEBI:17884 (2)
CHEBI:15756 (2)
CHEBI:64563 (2)
CHEBI:228252 (1)
CHEBI:181874 (1)
CHEBI:195269 (1)

Metabolite Name

Cholic acid (3)
Lyso-PC(16:0) (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
L-Saccharopine (2)
UDP-D-glucuronate (2)
N6,N6,N6-Trimethyl-L-lysine (2)
Betaine (2)
L-Lysine (2)
Coumarin (2)
Biliverdin (2)
Acetylcarnitine (2)
Cholesterol (2)
L-Histidine (2)
Methionine (2)
Stercobilin (2)
Taurocholic acid (2)
Tauroursodeoxycholic acid (2)
Elaidic acid (2)
Tyramine (2)
Adenosine (2)
Spermidine (2)
Tetrahydrocorticosterone (2)
NADH (2)
L-Pyroglutamic acid (2)
Dodecanedioic acid (2)
D-Proline (2)
Cytidine (2)
Creatinine (2)
Creatine (2)
L-Tyrosine (2)

First Public Date

2025 (14)
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2022 (8)
2021 (8)
2024 (6)
2023 (5)
2020 (4)
2017 (4)
2019 (3)
2014 (3)
2013 (2)
2018 (1)
2015 (1)

Classification

bacteria (1)

Modification

2x(15)N labeled L-lysine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (2)
Proteomic profiling by mass spectrometer (1)
ChIP-seq (1)

Release Date

2023 (67)
2022 (57)
2021 (57)
2025 (56)
2024 (42)
2020 (37)
2017 (37)
2016 (37)
2019 (36)
2015 (36)
2018 (33)
2014 (25)
2012 (13)
2013 (8)
2026 (7)
2009 (4)
2010 (4)
2011 (3)
2002 (1)

Lab affiliation

Centre de recherche du Centre Hospitalier Universitaire (CHU) de Quebec-Université Laval, Québec, QC, Canada Centre de recherche sur le cancer de l’Université Laval, Québec, QC, Canada PROTEO-Quebec Network for Research on Protein Function, Engineering, and Applications, Québec, QC, Canada Department of Molecular Biology, Medical Biochemistry and Pathology, Université Laval, Québec, QC, Canada (3)
Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, United States of America (2)
Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada (2)
Department of Experimental Oncology, IEO, European Institute of Oncology IRCCS, Milan, Italy (2)
Discovery Proteomics Facility, University of Oxford (2)
IBMM, Univ Montpellier, CNRS, ENSCM, 34095 Montpellier, France (2)
Protein Analytics, Institute of Biochemistry, Faculty of Medicine, University Giessen, Germany (2)
Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences (2)
-Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium -Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium (1)
1 - College of Pharmacy, University of Sharjah, Sharjah 2 - Sharjah Institute for Medical Research, University of Sharjah, Sharjah (1)
1 Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium 2 Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium (1)
All liquid chromatography MS/MS (LC-MS/MS) data were searched against the relevant database using PEAKS 10.5 or Peaks X Pro (Bioinformatics Solution Inc.). For peptide identification, tolerance was set at 10 ppm and 0.01 Da for precursor and fragment ions, respectively. The occurrences of oxidation (M), deamidation and TMT modification were set as variable modifications (1)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (1)
Associate Professor Biology, Dalhousie University (1)
CABIMER (1)
Cedars-Sinai Medical Center (1)
Center for Integrative Genomics, University of Lausanne, Switzerland (1)
Center for Reproductive Medicine, Cheeloo College of Medicine, Shandong University, Jinan, China (1)
Centre de Recherche sur le Cancer, PROTEO et Département de Biologie Moléculaire, Biochimie Médicale et Pathologie, Université Laval, Division Oncologie, Centre de Recherche du Centre Hospitalier Universitaire (CHU) de Québec, Québec, Canada (1)
China University of Geosciences(Wuahn),Wuahn, China (1)
China University of Geosciences, Wuhan (1)
College of Dental Medicine, Oral Health Sciences, Medical Univeristy of South Carolina, USA (1)
College of Pharmacy and Research Institute of Pharmaceutical Sciences, Kyungpook National University, Daegu 41566, Republic of Korea (1)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University, Republic of Korea (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
Departament of Byossistems, KULeuven, Leuven 3000, Belgium (1)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, 9713 AV Groningen, The Netherlands. (1)
Department of Biochemistry and Microbiology, Institute of Biology, Warsaw University of Life Scienc-es-SGGW, Poland (1)
Department of Biochemistry and Molecular Biology University of Arkansas for Medical Sciences USA (1)

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Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins

This SuperSeries is composed of the following subset Series: GSE39579: Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins (Chip-Seq data) GSE39580: Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins (expression data) Ref...

ORGANISM(S): Homo sapiens

2012-07-30 | E-GEOD-39581 | biostudies-arrayexpress

Proteo-transcriptional architecture of human pressure overload: implications for heart failure

PRJNA1093010 | ENA

Formation of Giant Unilamellar Proteo-Liposomes by Osmotic Shock.

Not available

S-EPMC4950989 | biostudies-literature

Mapping the proteo-genomic convergence of human diseases.

Not available

S-EPMC9904207 | biostudies-literature

Proteo-lipobeads for the oriented encapsulation of membrane proteins.

Not available

S-EPMC4387127 | biostudies-literature

A proteo-transcriptomic map of non-alcoholic fatty liver disease signatures.

Not available

S-EPMC10132975 | biostudies-literature

Proteome Coverage after Simultaneous Proteo-Metabolome Liquid-Liquid Extraction.

Not available

S-EPMC9990123 | biostudies-literature

Proteo-transcriptional architecture of human pressure overload: implications for heart failure

Chronic pressure overload initiates a series of molecular alterations in the human heart that predate macroscopic organ-level remodeling and downstream heart failure (HF). We hypothesized that integrating easily accessible circulating mediators (proteome) with their expression in the heart (transcri...

ORGANISM(S): Homo sapiens

2025-05-01 | GSE262690 | GEO

Extracellular vesicles carry distinct proteo-transcriptomic signatures that are different from their cancer cell of origin.

Not available

S-EPMC9157216 | biostudies-literature

Proteo-genetic analysis reveals clear hierarchy of ESX-1 secretion in Mycobacterium marinum.

Not available

S-EPMC9214503 | biostudies-literature

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