Proteogenomic - OmicsDI

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UNIPROT ID/AC

1433E_HUMAN (30)
4EBP1_HUMAN (30)
4F2_HUMAN (30)
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8ODP_HUMAN (30)
A0A087WVV2_HUMAN (30)
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ENSEMBL ID

ENSG00000170477 (151)
ENSG00000229353 (83)
ENSG00000147251 (40)
ENSG00000247315 (16)
ENSG00000204131 (11)
ENSG00000176092 (5)
ENSG00000214897 (3)

First Public Date

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2017 (9)
2013 (4)
2015 (3)
2014 (3)

Classification

bacteria (3)

Modification

Not available (4)
15.994915 (3)
42.010565 (3)
57.021464 (3)
-17.026549 (2)
-18.010565 (2)
2x(15)N labeled L-lysine (1)
45.029395 (1)
4x(15)N labeled L-arginine (1)

Study type

RNA-seq of coding RNA (8)
Transcription profiling by array (6)
ChIP-seq (2)
RNA-seq of non coding RNA from single cells (1)
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Release Date

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2025 (66)
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2008 (1)

Lab affiliation

Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (20)
Vanderbilt University (10)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (5)
Baylor College of Medicine (3)
Director of Women’s Health Research Women’s Service Line Inova Health System (3)
Moffitt Cancer Center (3)
Molecular Genetics, RPTU Kaiserslautern (3)
BioBix, Faculty of Bioscience Engineering, Ghent University, Coupure Links 653, Ghent, Belgium (2)
CNRS-Université de Strasbourg (IPHC) (2)
Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN 55905 (2)
Department of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA USA (2)
Division of Surgery, Oncology, and Pathology, Department of Clinical Sciences. Biomedical Center – Lund University, Solvegatan 19, 223 62, Lund, Sweden (2)
Li2D (2)
Lund University (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (2)
Memorial Sloan Kettering Cancer Center (2)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY (2)
National Key Laboratory of Wheat and Maize Crop Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, China (2)
Proteomics (2)
Quantitative proteomics University of Tuebingen Auf der Morgenstelle 15 72076 Tuebingen Germany (2)
Seoul National University (2)
Shenzhen People’s Hospital (2)
The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institutes of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou 310022, China (2)
1 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, the Netherlands 2 Netherlands Proteomics Center, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1 Hudson Institute of Medical Research, Clayton, VIC, Australia, 2 Department of Molecular and Translational Sciences, Monash University, Clayton, VIC, Australia (1)
1Environmental Biotechnology and Genomics Laboratory, School of the Environment, Florida A&M University, Tallahassee, FL- 32307, USA (1)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)

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A proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships

Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, a potentially fatal foodborne disease. Many different Listeria strains and serotypes exist, buthowever a proteogenomic resource that which would allow to bridges the gap in ourthe molecular understanding of th...

ORGANISM(S): Listeria Monocytogenes

2021-01-26 | PXD014294 | panorama

A proteogenomic resource enabling integrated analysis of Listeria genotype-proteotype-phenotype relationships

Listeria monocytogenes is an opportunistic foodborne pathogen responsible for listeriosis, the third most common foodborne disease. Many different Listeria strains and seroptypes exist, however a proteogenomic resource which would provide a basis for bridging the gap in the molecular understanding b...

ORGANISM(S): Listeria Monocytogenes Egd-e (ncbitaxon:169963) Listeria Monocytogenes Str. Scott A (ncbitaxon:1027396)

2019-06-01 | MSV000083881 | MassIVE

Proteogenomics of High hyperdiploid childhood acute lymphoblastic leukemia

Proteogenomic analysis and genomic profiling, RNA-sequencing, and mass spectrometry-based analysis of High hyperdiploid childhood acute lymphoblastic leukemia.

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2020-01-29 | MSV000084862 | MassIVE

APOLLO1: Proteogenomic analysis of lung adenocarcinoma

PRJNA865442 | ENA

APOLLO1: Proteogenomic analysis of lung adenocarcinoma

PRJNA865443 | ENA

Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins (Chip-Seq data)

Background: Histone post-translational modifications (PTMs) constitute a branch of epigenetic mechanisms that can control the expression of eukaryotic genes in a heritable manner. Recent studies have identified several PTM-binding proteins containing diverse specialized domains whose recognition of ...

ORGANISM(S): Homo sapiens

2012-07-31 | E-GEOD-39579 | biostudies-arrayexpress

Proteogenomic characterization of human colon and rectal cancer

Explore This Study at the NCI Proteomic Data Commons

Zhang, B., et al., Nature (2014) do...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2019-08-26 | MSV000084238 | MassIVE

Proteogenomic characterization of human early-onset gastric cancer

PRJNA508414 | ENA

Proteogenomic profiling of thymic and pulmonary neuroendocrine neoplasia.

PRJNA881751 | ENA

Comprehensive proteogenomic landscape for natural history of prostate cancer