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ProteomicsProteome2virus: Shotgun mass spectrometry data analysis pipeline for virus identification
To increase the number of virus species that can be detected we developed a shotgun proteomics based approach, which was applied to viral samples, after which the identified peptides were searched for in a database equipped with proteomic data of 46 viruses, known to be infectious to humans, using a...
ORGANISM(S): Homo sapiens (Human) Cercopithecus aethiops (Green monkey) (Grivet) Macaca mulatta (Rhesus macaque) 
2023-06-16 | PXD036663 | Pride
Diagnsoe Proteomics Identification Virus Proteome2virus Mass spectrometry 
ProteomicsProteome2virus: Shotgun mass spectrometry data analysis pipeline for virus identification in data subset of Ouwendijk et al. 2020, Analysis of Virus and Host Proteomes During Productive HSV-1 and VZV Infection in Human Epithelial Cells.
The initial project of the data of origin is described in Ouwendijk, et al. (2020). Analysis of Virus and Host Proteomes During Productive HSV-1 and VZV Infection in Human Epithelial Cells. Frontiers in Microbiology, 11, 1179. https://doi.org/10.3389/fmicb.2020.01179. To increase the number of vir...
ORGANISM(S): Human alphaherpesvirus 1 Varicellovirus 
2025-05-28 | PXD059217 | Pride
Retinal pigment epithelial cells Varicella-zoster virus Mass-spectrometry Software Herpes simplex virus 1 Epidermal growth factor 
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