Protozoan - OmicsDI

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Unknown (4328)
Genomics (549)
Transcriptomics (228)
Proteomics (143)
Metabolomics (14)
Models (6)
Other (5)
Clinical (2)
Multiomics (1)

Organisms

Mus musculus (60)
Homo sapiens (57)
Toxoplasma gondii (36)
Tetrahymena thermophila (31)
Trypanosoma brucei (30)
Entamoeba histolytica (27)
Leishmania major (11)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (9)
Trypanosoma cruzi (9)
Plasmodium falciparum (8)
Gallus gallus (7)
Leishmania donovani (7)
Trypanosoma brucei brucei (6)
Leishmania infantum (5)
Bos taurus (5)
Leishmania (4)
Ichthyophthirius multifiliis (4)
Macaca mulatta (4)
Babesia microti (3)
Trichomonas vaginalis (3)
Plasmodium falciparum 3D7 (2)
Acanthamoeba sp. (2)
Helicobacter pylori (2)
Trypanosoma evansi (1)
Theileria parva (1)
Leishmania tarentolae (1)
Locusta migratoria (1)
Leishmania mexicana (1)
Cryptococcus neoformans (1)
Escherichia coli (1)

Organisms

Mus musculus (41)
Homo sapiens (25)
Toxoplasma gondii (21)
Tetrahymena thermophila (20)
Trypanosoma cruzi (15)
Entamoeba histolytica (14)
Trypanosoma brucei (5)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (4)
Trichomonas vaginalis (4)
Leishmania donovani (4)
Leishmania major (4)
Giardia duodenalis (4)
Plasmodium falciparum (4)
Leishmania braziliensis (3)
Theileria annulata (3)
Amblyomma maculatum (3)
Trypanosoma brucei brucei (3)
Oxytricha trifallax (3)
Macaca mulatta (3)
Ichthyophthirius multifiliis (3)
Euglena gracilis (3)
Gallus gallus (3)
soil metagenome (3)
Leishmania amazonensis (2)
Leishmania infantum (2)
Tabanus nipponicus (2)
Babesia bigemina (2)
Giardia lamblia ATCC 50803 (2)
Tritrichomonas foetus (2)
Blastocystis hominis (2)

Repository

ENA (506)
geo (173)
pride (118)
biostudies-arrayexpress (98)
MetaboLights (14)
MassIVE (12)
iProX (8)
BioModels (6)
jPOST (5)
EGA (4)
GPMDB (1)

Tissue

Cell culture (24)
Permanent cell line cell (10)
Trophozoite (4)
Blood (3)
Blood serum (3)
Macrophage (3)
Whole body (3)
Blood plasma (2)
Diploid cell (2)
Eukaryotic cell (2)
Promastigote (2)
Tachyzoite (2)
Blood cell (1)
Cell suspension culture (1)
Cheek pouch (1)
Colon (1)
Dendritic cell (1)
Epithelial cell (1)
Extracellular exosome (1)
Extracellular vesicle (1)
Feces (1)
Fibroblast (1)
Gill (1)
Mantle (1)
Skin mucus (1)
Spleen (1)
T cell (1)

Disease

Giardiasis (10)
Leishmaniasis (4)
Trypanosomiasis (3)
Colorectal Neoplasms (1)
Cryptosporidiosis (1)
Not Available (1)
Amebiasis (1)
Babesiosis (1)
Colon cancer (1)
Disease free (1)
Leishmaniasis (1)
Lymphosarcoma (1)
Malaria (1)
Parasitic infectious disease (1)
Plasmodium vivax malaria (1)
Trypanosomiasis (1)
Visceral leishmaniasis (1)

Technology Type

Mass Spectrometry (118)
Shotgun proteomics (59)
Bottom-up proteomics (28)
Affinity purification coupled with mass spectrometry proteomics (19)
Gel-based experiment (18)
Data-dependent acquisition (16)
Mass spectrometry (14)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Proteogenomics (2)
SWATH MS (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2000 (1)
Data-independent acquisition (1)
Glycoproteomics (1)
MSE (1)

Instrument Platform

LTQ Orbitrap XL ETD (4)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - negative - reverse phase (3)
Bio-Rad T100 Thermocycler (2)
Illumina HiSeq 2500 (2)
Orbitrap Fusion Lumos (2)
Dell Precision Tower 7910 workstation (1)
Affymetrix GCS3000 7G SCANNER (1)
GeneChip Hybridization Oveer 640 (1)
HIVE computer cluster (1)
DNBSEQ-G50 (1)
The Agilent C scanner (1)
Agilent 2100 Bioanalyzer (1)
Illumina NovaSeq X (1)
N/A (1)
DNBSEQ-T7 (1)
MinION (1)
BGISEQ-500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
LTQ (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Q-Exactive HF mass spectrometer (1)
TripleTOF 5600 (1)

Publication Date

2025 (41)
2024 (34)
2022 (32)
2019 (29)
2023 (28)
2011 (28)
2026 (26)
2005 (25)
2015 (24)
2021 (21)
2020 (20)
2016 (18)
2013 (17)
2010 (13)
2018 (12)
2017 (12)
2012 (9)
2009 (9)
2006 (8)
2014 (7)
2007 (7)
2008 (4)
2002 (2)
2003 (1)

CHEBI ID

CHEBI:15428 (6)
CHEBI:15676 (5)
CHEBI:15891 (5)
CHEBI:16015 (5)
CHEBI:16235 (5)
CHEBI:16737 (5)
CHEBI:16857 (5)
CHEBI:17203 (5)
CHEBI:17295 (5)
CHEBI:17368 (5)
CHEBI:17562 (5)
CHEBI:18050 (5)
CHEBI:15603 (4)
CHEBI:13389 (1)
CHEBI:15422 (1)
CHEBI:15946 (1)
CHEBI:16027 (1)
CHEBI:16761 (1)
CHEBI:16908 (1)
CHEBI:17138 (1)
CHEBI:17234 (1)
CHEBI:17665 (1)
CHEBI:17754 (1)
CHEBI:17794 (1)
CHEBI:18367 (1)
CHEBI:26689 (1)
CHEBI:32816 (1)
CHEBI:40595 (1)
CHEBI:44897 (1)
CHEBI:57642 (1)

Metabolite Name

Glycine (4)
L-Glutamate (4)
L-Glutamine (4)
L-Phenylalanine (4)
L-Proline (4)
L-Threonine (4)
(S)-Malate (3)
16-hydroxypalmitate (3)
2-Acetolactate (3)
2-Oxobutanoate (3)
2-Oxoglutarate (3)
2-Oxooctadecanoic acid (3)
4-Hydroxy-4-methylglutamate (3)
Allantoin (3)
Bathocuproine disulfonic acid (3)
Chlorate (3)
Creatinine (3)
Cytidine (3)
D-Glycerate (3)
Deoxycytidine (3)
Diacetyl (3)
Glutathione (3)
Guanine (3)
HEPES (3)
Hypoxanthine (3)
L-Arginine (3)
L-Carnitine (3)
L-Cystine (3)
L-Histidine (3)
L-Leucine (3)

First Public Date

2013 (69)
2014 (62)
2026 (47)
2024 (46)
2025 (44)
2021 (43)
2023 (37)
2020 (30)
2017 (27)
2022 (26)
2019 (25)
2015 (22)
2018 (18)
2016 (9)
2010 (1)

Modelling Approach

Constraint-based model (4)
Ordinary differential equation model (2)

Study status

Active, not recruiting (1)
Not yet recruiting (1)

Lab affiliation

Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (7)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (4)
EDyP (3)
Laboratory of Molecular Parasitology, Institute of Parasitology, University of Zurich, Switzerland (3)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (3)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (2)
Department of Biomedical Chemistry, Graduate School of Medicine, The University of Tokyo (2)
Institute of Cell Biology, University of Bern, CH-3012 Bern, Switzerland (2)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (2)
Proteomics facility, Central Science Laboratory, University of Tasmania (2)
University of Freiburg, Institute of Biology II, Biochemistry/Functional Proteomics (2)
733 N. Broadway Room 527, Miller Research Building Baltimore MD 21205 USA (1)
Aix-Marseille univ, CNRS, Inserm, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Albert Einstein College of Medicine (1)
Biocenter, Faculty of Biology, Genetics, Ludwig-Maximilians-University Munich (LMU), 82152 Martinsried, Germany (1)
Biochemistry & Functional Proteomics, Institute of Biology II, University of Freiburg, Freiburg, Germany (1)
Biozentrum LMU, Genetics Großhaderner Strasse 2-4 82152 Planegg-Martinsried phone +4989218074603 http://www.genetik.biologie.uni-muenchen.de/research/boshart/index.html (1)
Biozentrum, University of Basel, Basel, Switzerland (1)
Carlos Chagas Institute, Fiocruz Parana, Functional Genomics Laboratory, Brazil Carlos Chagas Institute, Fiocruz Parana, Mass Spectrometry Facility RPT02H, Brazil (1)
Carnegie Mass Spectrometry Facility (1)
Cell Biology of Parasitism Unit Insitut Pasteur, 28 rue du Dr Roux, 75724 Paris Cedex 15, FRANCE (1)
Centro de Investigación y Desarrollo en Inmunología y Enfermedades Infecciosas (CIDIE), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET)/Universidad Católica de Córdoba (UCC). Córdoba, Argentina. Facultad de Ciencias de la Salud, Universidad Católica de Córdoba (UCC). Córdoba, Argentina. (1)
Chemistry and Biomolecular Sciences, Macquarie University, North Ryde (1)
Clinic for Poultry and Fish Medicine University of Veterinary Medicine Vienna Austria (1)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (1)
Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina (1)
DEPARTMENT OF TROPICAL MEDICINE,SCHOOL OF TROPICAL MEDICINE, KOLKATA, WEST BENGAL, INDIA (1)
Departament of Parasitology CTS183 University of Granada (1)
Departamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, PR, Brasil. Instituto Oswaldo Cruz, Rio de Janeiro, Brasil (1)
Departamento de Fisiologia e Biofisica, Universidade Federal de Minas Gerais (1)

Keyword

Colorectal cancer; chemotherapy; cancer pathogenesis; (1)
Infection and cancer (1)
Intestinal helminths; protozoan infections; (1)
Prevalence (1)

IsPrivate

False (6)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (2)

Classification

protozoa (132)
bacteria (10)
fungi (1)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (59)
Unknown experiment type (10)
RNA-seq of coding RNA (10)
Comparative genomic hybridization by array (5)
Other (3)
ChIP-seq (3)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
Genotyping by high throughput sequencing (1)
Observational (1)
Observational patient registry (1)

Release Date

2022 (397)
2023 (380)
2021 (367)
2025 (327)
2020 (323)
2024 (268)
2019 (267)
2018 (248)
2017 (235)
2015 (202)
2016 (201)
2014 (187)
2013 (156)
2012 (142)
2011 (128)
2010 (113)
2009 (83)
2007 (64)
2008 (63)
2005 (59)
2006 (48)
2026 (45)
2003 (34)
2002 (18)
2001 (16)
2004 (15)
1999 (14)
2000 (10)
1998 (9)
1997 (4)

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Differentiation mutants in the protozoan parasite Toxoplasma gondii.

Two forms of the protozoan parasite Toxoplasma gondii are associated with intermediate hosts such as humans: rapidly growing tachyzoites are responsible for acute illness, whereas slowly dividing encysted bradyzoites can remain latent within the tissues for the life of the host. In order to identify...

ORGANISM(S): Toxoplasma gondii

2005-08-13 | E-GEOD-3119 | biostudies-arrayexpress

Protozoan Co-infection Is Associated with Gut Microbiome Composition among School Children in Hawassa, southern Ethiopia

Protozoan Co-infection-Gut Microbiome

PRJEB127347 | ENA

Protozoan Co-infection Is Associated with Gut Microbiome Composition among School Children in Hawassa, southern Ethiopia

Protozoan Co-infection-Gut Microbiome

PRJEB127344 | ENA

A novel protein coding potential of long intergenic non-coding RNAs (lincRNAs) in the kinetoplastid protozoan parasite Leishmania major

Leishmania major is a kinetoplastid protozoan parasite which causes the debilitating infectious disease cutaneous leishmaniasis (CL). This disease results in scars and disfiguration of the infected individuals. The L. major genome was the first leishmanial genome to be sequenced in 2005 and this stu...

ORGANISM(S): Leishmania major

2016-05-11 | PXD002465 | Pride