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GenomicsExpressed Pseudogenes in the Transcriptional Landscape of Human Cancers

In this study, we describe a systematic analysis of pseudogene 'transcription' from an RNA-Seq resource of 293 samples, from 13 cancer and normal tissue types. We observed a highly prevalent, genome-wide expression of pseudogenes that could be categorized as universally expressed or linea...

phs000525.v1.p1 | EGA
TranscriptomicsDifferentially Expressed Pseudogenes in HIV-1 Infection
We analyzed transcriptomic data from infected and uninfected T-cells to identify pseudogenes and their parent genes showing differential expression in HIV-1 infection H9 T-cell line was infected with NL4-3 strain of HIV-1 obtained by transfection of 293T cells. RNA from infected and uninfected cells...
ORGANISM(S): Homo sapiens 
2016-02-29 | E-GEOD-70785 | biostudies-arrayexpress
GenomicsPseudogenes from Pomphorhynchus laevis
COI Pseudogenes cloned from Pomphorhynchus laevis
PRJEB18136 | ENA
GenomicsSystematic functional interrogation of human pseudogenes
Systematic functional interrogation of human pseudogenes
PRJNA649966 | ENA
TranscriptomicsDifferential gene expression in ahr-1 mutants compared to wild-type C. elegans
The aryl hydrocarbon receptor (AHR) functions in higher organisims in development, metabolism and toxic responses. Its Caenorhabditis elegans (C. elegans) ortholog, AHR-1, facilitates neuronal development, growth and movement. We investigated the effect of AHR mutation on the transcriptional profile...
ORGANISM(S): Caenorhabditis elegans 
2014-09-19 | E-GEOD-61537 | biostudies-arrayexpress
GenomicsExpressed Pseudogenes in the Translational Landscape of Human Cancers
Expressed Pseudogenes in the Translational Landscape of Human Cancers
PRJNA173130 | ENA
ProteomicsLarge scale and significant expression from pseudogenes in Sodalis glossinidius - a facultative endosymbiont C4PR_LIV
The majority of bacterial genomes have high coding efficiencies, but there are an few genomes of the intracellular bacteria that have low gene density. The genome of the endosymbiont Sodalis glossinidius contains almost 50% pseudogenes containing mutations that putatively silence them at the genomic...
ORGANISM(S): Sodalis glossinidius 
2020-05-26 | PXD007068 | Pride
Proteomics Genomics Transcriptomics Proteogenomics 
GenomicsHybrid sequencing characterizes expression and function of mouse pseudogenes
Hybrid sequencing characterizes expression and function of mouse pseudogenes
PRJNA734591 | ENA
GenomicsLong-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
Long-read cDNA sequencing identifies functional pseudogenes in the human transcriptome
PRJNA673144 | ENA
GenomicsPositive natural selection of N6-methyladenosine on the RNAs of processed pseudogenes
Positive natural selection of N6-methyladenosine on the RNAs of processed pseudogenes
PRJNA722485 | ENA
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