Pulldown - OmicsDI

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Unknown (1330)
Proteomics (879)
Genomics (511)
Transcriptomics (164)
Other (21)
Metabolomics (6)
Methylation profiling (5)
Multiomics (1)

Organisms

Rattus norvegicus (793)
Homo sapiens (793)
Mus musculus (793)
Schizosaccharomyces pombe (792)
Homo sapiens (248)
Mus musculus (82)
Drosophila melanogaster (16)
synthetic construct (7)
Arabidopsis thaliana (7)
Saccharomyces cerevisiae (7)
Zea mays (5)
Caenorhabditis elegans (4)
Escherichia coli (4)
Schizosaccharomyces pombe (3)
Rattus norvegicus (3)
Bombyx mori (2)
Bos taurus (2)
Danio rerio (2)
Mus musculus x Mus spretus (2)
Synechococcus elongatus (2)
Brucella suis 1330 (1)
Xenopus laevis (1)
Trypanosoma brucei (1)
Mycobacterium tuberculosis (1)
Microtus ochrogaster (1)
Neurospora crassa (1)
Enterococcus faecalis (1)
Clostridioides difficile (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Sus scrofa domesticus (1)

Organisms

Homo sapiens (142)
Mus musculus (73)
Drosophila melanogaster (17)
synthetic construct (10)
Saccharomyces cerevisiae (9)
Rattus norvegicus (5)
Caenorhabditis elegans (4)
Arabidopsis thaliana (3)
Mus musculus x Mus spretus (2)
Danio rerio (2)
Microtus ochrogaster (1)
Nicotiana benthamiana (1)
Neurospora crassa (1)
Enterococcus faecalis (1)
Xenopus laevis (1)
Triticum aestivum (1)
Clostridioides difficile (1)
marine metagenome (1)
Zea mays (1)

Repository

pride (793)
ENA (342)
geo (132)
biostudies-arrayexpress (126)
EGA (99)
MassIVE (42)
iProX (32)
jPOST (12)
GNPS (3)
MetaboLights (3)
EVA (2)

Tissue

Cell culture (256)
Epithelial cell (91)
Permanent cell line cell (59)
Brain (32)
Embryonic stem cell (25)
HeLa cell (22)
Fibroblast (15)
Kidney (15)
B cell (15)
Liver (15)
Cell suspension culture (14)
T cell (14)
Hepatocyte (13)
Lung (12)
Blood cell (11)
Plant cell (10)
Whole body (10)
Early embryonic cell (9)
Leaf (9)
Blood (9)
Melanocyte (8)
Stem cell (8)
Colon (8)
Embryo (7)
HEK-293T cell (6)
Fibroblast of lung (5)
Macrophage (5)
Heart (5)
Blood plasma (5)
Breast (4)

Disease

Breast cancer (29)
Disease free (28)
Colon cancer (15)
Cervix carcinoma (13)
Acute leukemia (10)
Brain glioblastoma multiforme (5)
Lung cancer (5)
Giardiasis (5)
Hepatocellular carcinoma (4)
Osteosarcoma (4)
Neuroblastoma (4)
Melanoma (4)
Cardiovascular system disease (4)
Cerebrovascular disease (3)
Membranous glomerulonephritis (3)
Huntington Disease (3)
Prostate adenocarcinoma (3)
Multiple myeloma (3)
Brain cancer (3)
Amyotrophic lateral sclerosis (3)
Colorectal carcinoma (2)
Toxoplasmosis (2)
Skin cancer (2)
Plasmodium falciparum malaria (2)
Lung adenocarcinoma (2)
Prostate cancer (2)
Lymphoma (2)
Chronic myeloid leukemia (2)
Acute myeloid leukemia (2)
Osteoarthritis (2)

Technology Type

Mass Spectrometry (793)
Affinity purification coupled with mass spectrometry proteomics (347)
Shotgun proteomics (250)
Bottom-up proteomics (184)
Data-dependent acquisition (110)
Gel-based experiment (74)
Data-independent acquisition (41)
Illumina HiSeq 2000 (25)
Chemical cross-linking coupled with mass spectrometry proteomics (21)
Top-down proteomics (17)
Affinity proteomics (13)
Illumina HiSeq 2500 (ILLUMINA) (10)
SWATH MS (9)
Illumina MiSeq (7)
SRM/MRM (6)
RNA mass spectrometry (4)
DiaPASEF (3)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2500 (ILLUMINA) (2)
Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (2)
Illumina Genome Analyzer II (2)
Mass spectrometry (2)
Immunopeptidomics (2)
ILLUMINA, Illumina HiSeq 2000, Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
Proteogenomics (1)
MSE (1)
All-ion fragmentation (1)

Instrument Platform

NextSeq 500 (11)
Orbitrap Fusion Lumos (10)
Illumina HiSeq 2500 (9)
Illumina HiSeq 2000 (9)
Illumina NovaSeq 6000 (7)
Q Exactive Plus (7)
Q Exactive (6)
Orbitrap Eclipse (5)
Q Exactive HF (4)
LTQ Orbitrap Elite (4)
Illumina HiSeq 4000 (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion (3)
Axon GenePix 4000B scanning hardware (2)
Illumina NovaSeq X (2)
LTQ Velos ion-trap mass spectrometer (ThermoFisher) (2)
LTQ Orbitrap (2)
KAPA RNA HyperPrep Kit (1)
Whole Transcriptome v2 kit (1)
Bioanalyzer (1)
Covaris S220, Covaris LE220 (1)
AB SOLiD 4 System (1)
Ion Torrent PGM (1)
RNeasy Mini Kit (1)
NA (1)
N/a (1)
Illumina HiSeq 1000 (1)
Illumina NextSeq 500 (1)
Illumina MiSeq (1)
6550 iFunnel Q-TOF LC/MS (1)

Publication Date

2026 (167)
2025 (166)
2024 (147)
2023 (135)
2022 (129)
2021 (93)
2019 (56)
2016 (40)
2020 (37)
2014 (33)
2018 (30)
2017 (25)
2015 (19)
2010 (15)
2013 (11)
2011 (10)
2012 (8)
2008 (3)
2006 (3)
2009 (2)
2005 (1)

CHEBI ID

CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:75654 (1)
CHEBI:62005 (1)
CHEBI:234279 (1)
CHEBI:229468 (1)
CHEBI:229469 (1)
CHEBI:60193 (1)
CHEBI:191041 (1)
CHEBI:19226 (1)
CHEBI:40304 (1)
CHEBI:7417 (1)
CHEBI:178092 (1)
CHEBI:178091 (1)
CHEBI:19068 (1)
CHEBI:19688 (1)
CHEBI:19928 (1)
CHEBI:19229 (1)
CHEBI:19065 (1)
CHEBI:23774 (1)
CHEBI:20794 (1)
CHEBI:19702 (1)
CHEBI:89487 (1)
CHEBI:21891 (1)
CHEBI:45996 (1)
CHEBI:21440 (1)
CHEBI:20129 (1)
CHEBI:19289 (1)
CHEBI:20607 (1)
CHEBI:19062 (1)

Metabolite Name

5-Methoxycarbonylmethyl-2-thiouridine (1)
5-Carboxymethyluridine (1)
5-Carbamoylmethyluridine (1)
M6Am (1)
2'O-methyladenosine (1)
5-Formylcytidine (1)
N6-methyl-2’-deoxyadenosine (1)
6-hydroxymethyladenosine (1)
Dihydrouridine (1)
5-hydroxymethylcytidine (1)
Queuosine (1)
8-Oxoguanosine (1)
2'-O-Methyl-5-methyluridine (1)
3-(3-Amino-3-carboxypropyl)uridine (1)
8-methyladenosine (1)
3-methylpseudouridine (1)
5-methyluridine (1)
1-methylpseudouridine (1)
2-methyladenosine (1)
6-methyladenosine (1)
1-methylinosine (1)
3-methyluridine (1)
5-methoxycarbonylmethyluridine (1)
7-methylguanosine (1)
Deoxyadenosine (1)
N6-threonylcarbamoyladenosine (1)
2'-O-methylguanosine (1)
3-methylcytidine (1)
5-methylcytidine (1)
1-Methylguanosine (1)

First Public Date

2024 (51)
2023 (43)
2025 (34)
2021 (27)
2026 (24)
2019 (23)
2017 (22)
2022 (21)
2014 (21)
2016 (18)
2020 (17)
2018 (15)
2013 (14)
2015 (11)
2010 (1)

Classification

bacteria (2)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
57.021464 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
79.966331 (1)
15.994915 (1)
N6 (1)
Not available (1)

Study type

RNA-seq of coding RNA (34)
ChIP-seq (27)
ChIP-chip by tiling array (13)
Other (11)
Methylation profiling by high throughput sequencing (9)
Transcription profiling by array (6)
ChIP-chip by array (5)
RIP-seq (5)
DNA-seq (5)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
GRO-seq (1)
Plant - High-throughput sequencing (1)
Translation profiling (1)
Transcription profiling by tiling array (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (173)
2021 (145)
2023 (144)
2020 (115)
2024 (107)
2025 (95)
2019 (93)
2016 (74)
2018 (72)
2010 (60)
2014 (59)
2017 (58)
2015 (48)
2011 (45)
2013 (40)
2012 (35)
2009 (29)
2008 (23)
2026 (17)
2006 (6)
2007 (6)
2001 (4)
2005 (2)
2002 (2)
1999 (2)
2004 (1)
2000 (1)

Lab affiliation

Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (10)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (7)
Institute of Medical Microbiology, University of Zurich (6)
Moffitt Cancer Center Tampa, FL, USA (5)
Buchmann Institute of Molecular Life Sciences and Institute of Biophysical Chemistry, Goethe University, Frankfurt am Main, Germany (4)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (4)
Novartis Inst. for BioMedical Research (4)
Baylor College of Medicine (4)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (4)
Leibniz Institute of Plant Biochemistry, Department Biochemistry of Plant Interactions, Weinberg 3, 06120 Halle (Saale), Germany (3)
Chair of Proteomics and Bioanalytics Technical University of Munich Emil-Erlenmeyer-Forum 5 85354 Freising Germany (3)
Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (3)
CRUK Cambridge Institute University of Cambridge Li Ka Shing Centre Robinson Way CB2 0RE Cambridge United Kingdom (3)
BGI Research (3)
Department of Molecular Cell Biology, Leiden University Medical Center, The Netherlands (3)
Department of Biology – Cellular Proteostasis and Mass Spectrometry, University of Konstanz (3)
First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China (3)
Institute of Molecular Biology (IMB) Ackermannweg 4 55128 Mainz (3)
Institute of Biochemistry ETHZ (3)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Aarhus University Department of Biomedicine DK-8000 Aarhus (3)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (3)
Head of the Curie Institute Mass Spectrometry Platform (3)
Institute for Cardiovascular Physiology, Faculty of Medicine, Goethe-University; Frankfurt am Main, Germany (2)
Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA (2)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (2)
School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Max Delbruck Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany (2)

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RNA pulldown target circGLS2

PRJNA786500 | ENA

Gas5 Pulldown Total and small RNAseq

PRJNA748426 | ENA

FoxP3 Pulldown-seq (Nucleosomal DNA)

PRJNA1018996 | ENA

miR-146a Pulldown-sequencing data

PRJNA675568 | ENA

miR-150 Pulldown-sequencing data

PRJNA675569 | ENA

Comparing two approaches of miR-34a target identification, biotinylated-miRNA pulldown vs miRNA overexpression

PRJNA524346 | ENA

Pulldown GST-SH3 domains of Endophilin and rat brain lysates

Pulldown experiments using GST-SH3 domains from hman Endophilin A1, A2 and A3 and rat brain lysates

ORGANISM(S): Rattus norvegicus (Rat)

2018-08-06 | PXD010090 | Pride

MMV2224 project pulldown experimental data

Chemical pulldown - sample processing, fractionation, protein identification and quantitation All aspects of sample processing, TMT labelling, fractionation by HPLC and LC–MS/MS, and protein identification and quantitation were described previously (Milne, R., et al., Toolkit of Approaches To Suppo...

ORGANISM(S): Plasmodium falciparum (isolate 3D7)

2026-09-07 | PXD075229 | Pride

Pulldown Kinase inhibitors Plasmodium falciparum

RNA pulldown-MS, Dlg4 RNA in mouse brain

Goal was to identify RNA-binding proteins with a preference for m6A-modified RNA using an RNA bait generated from a known m6A site in the Dlg4 (PSD-95) mRNA 3`-UTR. By comparison of differential enrichment between m6A-RNA pulldown fractions and A-RNA or no RNA fractions, we can identify m6A-binding ...

ORGANISM(S): Mus musculus (Mouse)

2022-10-13 | PXD034159 | Pride

Pulldown M6a Rna Lc-ms/ms

Comparing two approaches of miR-34a target identification, biotinylated-miRNA pulldown vs miRNA overexpression

Here we show that biotin-labelled miR-34a can be loaded to AGO2, and AGO2 immunoprecipitation can pulldown biotinylated miR-34a (Bio-miR pulldown). RNA-sequencing (RNA-seq) of the Bio-miR pulldown RNAs efficiently identified miR-34a mRNA targets, which could be verified with luciferase assays. In co...

ORGANISM(S): Homo sapiens

2019-02-27 | GSE127211 | GEO

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2916 Results

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