Pyrococcus - OmicsDI

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Unknown (630)
Genomics (63)
Transcriptomics (29)
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Organisms

Pyrococcus furiosus (20)
Thermococcus kodakarensis (8)
Pyrococcus furiosus DSM 3638 (8)
Pyrococcus abyssi (3)
Haloferax volcanii (3)
Saccharomyces cerevisiae (3)
Homo sapiens (3)
Methanococcus maripaludis S2 (2)
Pyrodictium abyssi (2)
Methanococcus maripaludis (2)
Thermococcus sp. AM4 (2)
Methanocaldococcus jannaschii (2)
Sulfolobus acidocaldarius (2)
Thermococcus kodakarensis KOD1 (1)
Nicotiana attenuata (1)
Butyrivibrio sp. AE3003 (1)
Staphylococcus epidermidis AG42 (1)
Lachnoclostridium phytofermentans KNHs2132 (1)
Exiguobacterium antarcticum DSM 14480 (1)
Exiguobacterium oxidotolerans JCM 12280 (1)
Exiguobacterium acetylicum DSM 20416 (1)
Exiguobacterium aurantiacum DSM 6208 (1)
Clostridioides mangenotii LM2 (1)
Lachnospiraceae bacterium AC2012 (1)
Flavimarina sp. Hel_I_48 (1)
Prevotella sp. HUN102 (1)
Exiguobacterium chiriqhucha (1)
Pediococcus acidilactici AGR20 (1)
Levilactobacillus brevis AG48 (1)
Polaromonas sp. EUR3 1.2.1 (1)

Organisms

Pyrococcus furiosus (11)
Pyrococcus furiosus DSM 3638 (5)
Pyrococcus furiosus COM1 (4)
Pyrococcus abyssi (3)
Pyrococcus horikoshii (2)
Pyrococcus yayanosii CH1 (1)
Pyrococcus sp. NA2 (1)
Pyrococcus abyssi GE5 (1)
Pyrococcus sp. ST04 (1)
Palaeococcus pacificus DY20341 (1)
Pyrococcus yayanosii (1)
Pyrococcus (1)
Pyrococcus horikoshii OT3 (1)
Pyrococcus kukulkanii (1)
Pyrococcus woesei (1)
synthetic metagenome (1)
Thermococcus kodakarensis KOD1 (1)
Escherichia coli str. K-12 substr. MG1655 (1)

Repository

ENA (58)
geo (21)
biostudies-arrayexpress (16)
pride (11)
MassIVE (2)
iProX (1)
jPOST (1)

Tissue

Whole body (3)
Permanent cell line cell (2)
Blood platelet (1)
HeLa cell (1)
Leaf (1)
Platelet (1)

Technology Type

Mass Spectrometry (11)
Shotgun proteomics (6)
Bottom-up proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-based experiment (2)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
SWATH MS (1)

Instrument Platform

Illumina HiSeq 2000 (2)
NextSeq 500 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)

Publication Date

2014 (6)
2015 (5)
2025 (5)
2016 (4)
2011 (4)
2026 (4)
2021 (3)
2012 (3)
2010 (3)
2020 (3)
2022 (3)
2018 (2)
2009 (2)
2013 (1)
2008 (1)
2007 (1)
2006 (1)
2023 (1)

First Public Date

2013 (17)
2014 (6)
2023 (5)
2025 (4)
2020 (4)
2024 (3)
2022 (3)
2018 (3)
2017 (3)
2016 (3)
2015 (3)
2026 (2)
2019 (2)

Classification

bacteria (1)

Modification

15.994915 (2)
57.021464 (2)
-17.026549 (1)
-18.010565 (1)
144.105918 (1)
42.010565 (1)
79.966331 (1)

Study type

Transcription profiling by array (5)
RNA-seq of coding RNA (4)
Transcription profiling by tiling array (2)
ChIP-seq (2)
High-throughput sequencing (1)
Other (1)
RNA-seq of non coding RNA (1)

Release Date

2014 (44)
2016 (36)
2018 (34)
2015 (33)
2012 (31)
2017 (31)
2013 (30)
2009 (28)
2025 (28)
2019 (27)
2010 (25)
2020 (25)
2021 (24)
2007 (24)
2011 (23)
2022 (23)
2008 (23)
2006 (21)
2024 (20)
2005 (19)
2023 (17)
2001 (14)
2004 (11)
2002 (10)
2000 (10)
2003 (9)
1998 (9)
1999 (8)
1997 (5)
2026 (4)

Lab affiliation

Bioanalytical Mass Spectrometry Group Max Planck Institute for Multidisciplinary Sciences Germany Bioanalytics Institute for Clinical Chemistry University Medical Center Goettingen Germany (1)
Bioanalytik (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States (1)
Department of Medical Protein Research, VIB, Ghent, Belgium Department of Biochemistry, Ghent University, Ghent, Belgium (1)
Departments of Pediatrics and Immuno-Oncology, Beckman Research Institute, City of Hope National Medical Center, Duarte CA 91010 (1)
INRA MICALIS PAPPSO (1)
Laboratoire de Biologie Structurale de la Cellule, BIOC, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91120, Palaiseau, France (1)
Max Planck Institute of Biochemistry, Germany (1)
State Key Laboratory of Microbial Technology, Microbiology and Biotechnology Institute, Shandong University (1)
University Medical Center Goettingen, Department of Clinical Chemistry, Core Facility Proteomics, Göttingen, Germany (1)

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Pyrococcus furiosus

Pyrococcus furiosus psiRNAs

PRJNA117257 | ENA

Pyrococcus furiosus COM1

Pyrococcus furiosus COM1 Genome Sequencing

PRJNA163827 | ENA

Heat and Cold Shock Response in Pyrococcus furiosus

We designed an experimental setup to investigate the transcriptomic and proteomic responses of the hyperthermophilic archaeon Pyrococcus furiosus to heat and cold shock. P. furiosus is a model organism for studying microbial adaptation to extreme environments, including deep-sea hydrothermal vents ...

ORGANISM(S): Pyrococcus furiosus

2023-10-11 | PXD041262 | Pride

Pyrococcus furiosus psiRNAs

Small RNA Sequencing from Pyrococcus furiosus Keywords: Small RNA Analysis Analysis of Small RNA from one sample of Pyrococcus furiosus

ORGANISM(S): Pyrococcus furiosus

2009-12-28 | E-GEOD-16968 | biostudies-arrayexpress

RNA at 92 M-BM-0C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.

The non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi is investigated using the RNA-seq technology. A dedicated computational pipeline analyzes RNA-seq reads and prior genome annotation to identify small RNAs, untranslated regions of mRNAs, and cis-encoded antisense transc...

ORGANISM(S): Pyrococcus abyssi

2014-05-31 | E-GEOD-58131 | biostudies-arrayexpress

Pyrococcus furiosus COM1

Pyrococcus furiosus COM1 methylation detection - COM1 epigenomics

PRJNA409778 | ENA

Pyrococcus furiosus COM1

Pyrococcus furiosus COM1 methylation detection - COM1 epigenomics

PRJNA410434 | ENA

Pyrococcus yayanosii CH1

Pyrococcus yayanosii CH1 genome sequencing project

PRJNA66055 | ENA

Pyrococcus furiosus strain:JFW02