Qin D D - OmicsDI

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Unknown (6374)
Transcriptomics (244)
Proteomics (221)
Metabolomics (60)
Genomics (32)

Organisms

Homo sapiens (223)
Mus musculus (84)
Arabidopsis thaliana (32)
Rattus norvegicus (13)
Saccharomyces cerevisiae (11)
Oryza sativa (9)
Drosophila melanogaster (8)
Schizosaccharomyces pombe (5)
Penicillium oxalicum (4)
Danio rerio (4)
Gossypium hirsutum (3)
Gallus gallus (3)
Epinephelus coioides (2)
Harpegnathos saltator (2)
Zea mays (2)
Oryza sativa Japonica Group (2)
Streptomyces avermitilis (2)
Iridovirus (1)
Spodoptera litura (1)
Oreochromis niloticus (1)
Capsicum annuum var. glabriusculum (1)
Brassica carinata x Brassica rapa (1)
Penicillium decumbens (1)
Chromolaena odorata (1)
Beauveria bassiana (1)
Epinephelus tauvina (1)
Brassica oleracea (1)
Camponotus floridanus (1)
Oryza longistaminata (1)
Tetrahymena thermophila (1)

Organisms

Homo sapiens (2)
Yersinia pestis (1)
Streptomyces avermitilis (1)

Repository

biostudies-arrayexpress (260)
pride (137)
iProX (60)
MetaboLights (60)
MassIVE (15)
EGA (9)
ENA (4)
geo (3)
jPOST (3)
PanoramaPublic (3)
PAXDB (3)

Tissue

Cell culture (27)
Brain (14)
Epithelial cell (13)
Liver (7)
Heart (6)
Plant cell (6)
Kidney (5)
Root (5)
Shoot (5)
Lung (4)
Whole body (4)
Blood (3)
Blood plasma (3)
Feces (3)
Leaf (3)
Mesenchymal cell (3)
Permanent cell line cell (3)
Testis (3)
Bone cell (2)
Early embryonic cell (2)
Hepatocyte (2)
Optic nerve (2)
Retina (2)
Spleen (2)
Accessory sex gland (1)
Blood cell (1)
HEK-293 cell (1)
HeLa cell (1)
PK-15 cell (1)
T cell (1)

Disease

Disease free (8)
Cardiovascular system disease (5)
Breast cancer (3)
Glioblastoma (3)
Brain cancer (2)
Hepatocellular carcinoma (2)
Osteosarcoma (2)
Oligodendroglioma (1)
Osteocytes/osteoblasts (1)
Prostate cancer (1)
Acute leukemia (1)
Childhood medulloblastoma (1)
Colon cancer (1)
Endometrial Endometrioid Adenocarcinoma (1)
Inflammatory bowel disease (1)
Medulloblastoma (1)
Melanoma (1)
Mixed disorder as reaction to stress (1)
Myocardial ischemia (1)
Pancreatic ductal adenocarcinoma (1)
Stomach carcinoma (1)

Technology Type

Mass Spectrometry (137)
Shotgun proteomics (72)
Mass spectrometry (48)
Bottom-up proteomics (38)
Data-dependent acquisition (17)
Affinity purification coupled with mass spectrometry proteomics (13)
Mass spectrometry assay (9)
Gel-based experiment (7)
Top-down proteomics (5)
NMR spectroscopy (4)
Metaproteomics (4)
SRM/MRM (3)
Immunopeptidomics (2)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Affinity proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (18)
Liquid Chromatography MS - positive - reverse phase (17)
DNA Microarray Scanner BA [Agilent Technologies] (5)
Orbitrap Exploris 480 (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
Liquid Chromatography MS - negative (4)
Liquid Chromatography MS - negative - hilic (4)
G2565BA DNA microarray scanner [Agilent] (3)
Orbitrap Fusion Lumos (3)
Bruker (3)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
NextSeq 500 (2)
LTQ Orbitrap Elite (2)
BGIseq500 (1)
Axon Instruments GenePix 4000B scanner (1)
DNBSEQ-T7 (1)
BGISEQ-500 (1)
Illumina MiSeq (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Fusion (1)
Q Exactive HF (1)
Velos Plus (1)

Publication Date

2022 (46)
2024 (43)
2014 (40)
2015 (39)
2026 (37)
2025 (35)
2012 (34)
2021 (32)
2023 (30)
2016 (28)
2013 (28)
2010 (28)
2011 (25)
2020 (20)
2008 (16)
2018 (14)
2019 (12)
2007 (8)
2017 (8)
2009 (7)
2005 (6)
2006 (1)
2004 (1)
2003 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

CHEBI ID

CHEBI:27897 (20)
CHEBI:16811 (19)
CHEBI:18237 (19)
CHEBI:26271 (19)
CHEBI:15354 (18)
CHEBI:15741 (18)
CHEBI:28044 (18)
CHEBI:6650 (17)
CHEBI:15891 (16)
CHEBI:16335 (16)
CHEBI:16704 (16)
CHEBI:30769 (16)
CHEBI:7916 (16)
CHEBI:16708 (15)
CHEBI:16865 (15)
CHEBI:17154 (15)
CHEBI:17368 (15)
CHEBI:18211 (15)
CHEBI:25017 (15)
CHEBI:29016 (15)
CHEBI:16919 (14)
CHEBI:17351 (14)
CHEBI:17568 (14)
CHEBI:17750 (14)
CHEBI:18257 (14)
CHEBI:25094 (14)
CHEBI:28300 (14)
CHEBI:16196 (13)
CHEBI:16737 (13)
CHEBI:16750 (13)

Metabolite Name

Taurine (10)
Uridine (10)
Citrulline (9)
Guanosine (9)
Linoleic acid (9)
Adenine (8)
L-Histidine (8)
Pantothenic acid (8)
Adenosine (7)
Citric acid (7)
Creatinine (7)
Inosine (7)
L-Glutamine (7)
L-Phenylalanine (7)
L-Tyrosine (7)
Leucine (7)
Oleic acid (7)
Stearic acid (7)
Alanine (6)
Choline (6)
Cortisol (6)
Creatine (6)
Cytidine (6)
Fumaric acid (6)
Glycerophosphocholine (6)
Glycine (6)
Hypoxanthine (6)
L-Arginine (6)
L-Threonine (6)
Ornithine (6)

First Public Date

2014 (3)
2022 (1)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (149)
RNA-seq of coding RNA (48)
ChIP-seq (16)
RNA-seq of non coding RNA (14)
Unknown experiment type (10)
Comparative genomic hybridization by array (7)
Methylation profiling by array (5)
Other (4)
Methylation profiling by high throughput sequencing (3)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (923)
2022 (900)
2023 (836)
2024 (785)
2021 (681)
2020 (476)
2019 (368)
2018 (269)
2017 (231)
2015 (223)
2016 (216)
2026 (148)
2014 (141)
2013 (103)
2012 (83)
2011 (66)
2010 (58)
2008 (33)
2009 (31)
2007 (20)
2005 (14)
2006 (13)
2004 (4)
2002 (4)
1999 (3)
2003 (2)
1998 (2)
1997 (1)

Lab affiliation

ARC Centre of Excellence in Plant Energy Biology, M316, 35 Stirling Hwy, 6009, WA, Australia Faculty of Science, The University of Western Australia (4)
Cornell University (4)
University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
Alkali Soil Natural Environmental Science Center, Northeast Forestry University, Key Laboratory of Saline-alkali Vegetation Ecology Restoration in Oil Field, Ministry of Education, Harbin 150040, China (3)
BGI Research (3)
Case Western Reserve University (3)
Department of Immunology, College of Basic Medical Science, China Medical University, Shenyang, Liaoning 110122, China (3)
Faculty of Medicine, University of Ottawa, Ottawa, ON Canada (3)
Department of Molecular Pharmacology and Therapeutics Columbia University Irving Medical Center (2)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Huazhong Agricultural University (2)
Hubei University of Medicine, Taihe Hospital (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
Mayo Clinic, Department of Oncology (2)
Program for Cancer and Cell Biology, Department of Human Anatomy, Histology and Embryology, School of Basic Medical Sciences; Peking University International Cancer Institute; State Key Laboratory of Molecular Oncology, Peking University Health Science Center, Beijing 100191, China. (2)
Shanghai Institute of Rheumatology, Renji Hospital, Shanghai Jiao Tong University School of Medicine (SJTUSM) (2)
Shanghai Tenth People's Hospital, Tongji University School of Medicine (2)
State Key Laboratory of Reproductive Medicine, Department of Histology and Embryology, Nanjing Medical University, Nanjing 211166, Jiangsu, China (2)
USDA-ARS (2)
Vetsuisse Faculty (VET), Department of Molecular Mechanisms of Disease, University of Zurich (UZH) (2)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1)Chongqing Medical University;2) Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital (1)
Aalborg university (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Sciences, Capital Normal University, Beijing 100048, China (1)
Bio-X Institutes, Key Laboratory for the Genetics of Development and Neuropsychiatric Disorders (Ministry of Education), Shanghai Key Laboratory of Psychotic Disorders, and Brain Science and Technology Research Center, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, China. (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cardiovascular department, Yale University (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Centre de Recherche sur le Cancer de l‘Université Laval,Oncology, Centre de Recherche du CHU de Québec-Université Laval, Canada, G1R 3S3 (1)

Tags

xref:PubMed:23922758 (1)
xref:PubMed:19656197 (1)
xref:PubMed:21345178 (1)
pathogen:bacterium (1)
pathogen (1)

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Mycobacterium tuberculosis produces D-serine under hypoxia to limit CD8+ T cell-dependent immunity in mice

Interferon (IFN)-γ-producing CD8+ T cells are involved in control of Mycobacterium tuberculosis (Mtb) infection, in part by promoting antimicrobial activities of macrophages. Whether Mtb counters these responses, particularly during the hypoxic conditions that arise within granulomas during infectio...

ORGANISM(S): Mycobacterium tuberculosis OFXR-32

2024-08-10 | PXD050258 | Pride

Characterization of expression changes in qin by tiling array

Qin, a novel protein comprising amino-terminal E3 ligase and five carboxy terminal Tudor domains, silences transposons and ensures genome stability in the Drosophila germline by promoting antisene piRNA amplification via Aubergine:Ago3 Ping-Pong and preventing futile Aubergine:Aubergine interactions...

ORGANISM(S): Drosophila melanogaster

2011-11-18 | E-GEOD-30061 | biostudies-arrayexpress

DNA methylation analysis of prostate cancer cell lines and tissues using Next Generation Sequencing

Beginning with precursor lesions, aberrant DNA methylation marks the entire spectrum of prostate cancer progression. We mapped the global DNA methylation patterns in prostate tissues (n=17) and cells (n=2) from fifty nanograms of genomic DNA using Methylplex-Next Generation Sequencing (M-NGS). A...

ORGANISM(S): Homo sapiens

2011-05-09 | E-GEOD-27618 | biostudies-arrayexpress

1,25-Dihydroxyvitamin D protects against age-related osteoporosis by a novel VDR-Ezh2-p16 signal axis.

Not available

S-EPMC6996957 | biostudies-literature

Association between blood circulating vitamin D and colorectal cancer risk in Asian countries: a systematic review and dose-response meta-analysis.

Not available

S-EPMC7008426 | biostudies-literature

Admission D-dimer levels, D-dimer trends, and outcomes in COVID-19.

Not available

S-EPMC7439969 | biostudies-literature

Redesign of a novel D-allulose 3-epimerase from Staphylococcus aureus for thermostability and efficient biocatalytic production of D-allulose.