Qiu Chen C - OmicsDI

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Unknown (2770)
Proteomics (71)
Transcriptomics (26)
Metabolomics (15)
Genomics (3)

Organisms

Allexis (46)
Arabidopsis thaliana (46)
Entamoeba histolytica HM-1:IMSS-A (46)
Escherichia coli (46)
Homo sapiens (46)
Listeria monocytogenes (46)
Medicago truncatula (46)
Mus musculus (46)
Rattus norvegicus (46)
Saccharomyces cerevisiae (46)
Schizosaccharomyces pombe (46)
Sinorhizobium meliloti BL225C (46)
Solanum tuberosum (46)
Staphylococcus aureus (46)
Sus scrofa domesticus (46)
Homo sapiens (31)
Mus musculus (8)
Macaca mulatta (2)
Bos taurus (2)
Drosophila melanogaster (2)
Vitis sp. cv. 'Norton' (1)
Yersinia pestis (1)
Nicotiana tabacum (1)
Arabidopsis thaliana (1)
Adeno-Associated Virus PREDICT_AaV-6 (1)
Caenorhabditis elegans (1)
Chromochloris zofingiensis (1)
Dimocarpus longan (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Staphylococcus aureus (1)

Organisms

Yersinia pestis (1)

Repository

pride (46)
biostudies-arrayexpress (27)
iProX (24)
MetaboLights (15)
EGA (1)
MassIVE (1)
ENA (1)

Tissue

Cell culture (10)
Liver (4)
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Breast cancer cell line (1)
CNS neuron (sensu Nematoda and Protostomia) (1)
Cerebrospinal fluid (1)
Corneal endothelial cell (1)
Dental pulp cell (1)
HCT-116 cell (1)
Heart (1)
Hepatocyte (1)
Kidney (1)
Macrophage (1)

Disease

Colon cancer (4)
Breast cancer (3)
Disease free (2)
Hepatocellular carcinoma (2)
Alzheimer's disease (1)
Aortic dissection (1)
Brain cancer (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Chronic kidney disease (1)
Lung carcinoma (1)
Melanoma (1)
Non-small cell lung carcinoma (1)
Severe acute respiratory syndrome (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (46)
Shotgun proteomics (23)
Mass spectrometry (14)
Bottom-up proteomics (6)
Gel-based experiment (5)
Proteogenomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (2)
SWATH MS (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
HDMSE (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - negative - reverse phase (6)
Gas Chromatography MS - (2)
NextSeq 550 (1)
Q Exactive HF (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
MS Imaging - (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (14)
2025 (12)
2022 (12)
2023 (11)
2014 (9)
2021 (9)
2019 (7)
2018 (5)
2016 (4)
2015 (4)
2012 (4)
2020 (4)
2009 (3)
2026 (3)
2010 (2)
2011 (1)
2017 (1)

CHEBI ID

CHEBI:16643 (8)
CHEBI:17895 (8)
CHEBI:16359 (7)
CHEBI:16857 (7)
CHEBI:16015 (7)
CHEBI:17191 (7)
CHEBI:17368 (7)
CHEBI:16755 (6)
CHEBI:35581 (6)
CHEBI:16335 (6)
CHEBI:16467 (6)
CHEBI:18019 (6)
CHEBI:17203 (6)
CHEBI:18183 (6)
CHEBI:18050 (6)
CHEBI:16411 (6)
CHEBI:15971 (6)
CHEBI:16919 (6)
CHEBI:17295 (6)
CHEBI:18089 (6)
CHEBI:32365 (5)
CHEBI:30805 (5)
CHEBI:15765 (5)
CHEBI:16525 (5)
CHEBI:9300 (5)
CHEBI:28867 (5)
CHEBI:17311 (5)
CHEBI:15729 (5)
CHEBI:16831 (5)
CHEBI:15727 (5)

Metabolite Name

Chrysin (4)
Trigonelline (4)
Xanthurenic acid (4)
Phosphocholine (4)
Pantothenic acid (4)
Indole (4)
Adenosine (4)
Guanine (4)
Azelaic acid (4)
Creatine (4)
L-Tyrosine (4)
Inosine (4)
Hypoxanthine (4)
Piceatannol (3)
Phenylacetaldehyde (3)
Epinephrine (3)
Isoxanthopterin (3)
Leucine (3)
3-methoxytyramine (3)
Isoliquiritigenin (3)
Phenylacetic acid (3)
1-methyladenosine (3)
Uracil (3)
Valine (3)
L-kynurenine (3)
Genistein (3)
Propionylcarnitine (3)
Thiamine (3)
Sulfamethazine (3)
Syringic acid (3)

First Public Date

2014 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (4)
Transcription profiling by SAGE (1)
Other (1)
ChIP-seq (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (509)
2024 (383)
2022 (365)
2023 (353)
2021 (308)
2020 (225)
2019 (135)
2018 (120)
2017 (85)
2016 (80)
2026 (65)
2015 (55)
2014 (38)
2013 (28)
2012 (13)
2011 (9)
2010 (9)
2009 (6)
2008 (6)
2007 (3)
2006 (1)
2005 (1)

Lab affiliation

National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
College of Pharmacy, Jinan University, Guangzhou, China (2)
Department of Stomatology, Nanfang Hospital, Southern Medical University, Guangzhou, China, 510515 (2)
Beth Israel Deaconess Medical Center, Harvard Medical School, Broad Institute (1)
Boston Children's Hospital (1)
Boston University School of Medicine (1)
Changchun University of Chinese Medicine (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Department of Pediatric Pulmonology and Immunology, West China Second University Hospital, Sichuan University, Chengdu, China (1)
Department of Radiation Oncology, Shanghai Proton and Heavy Ion Center, Fudan University Cancer Hospital, China (1)
Department of Vascular Surgery, Shanghai Ninth People’s Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China (1)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Fudan University Shanghai Cancer Center, Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. International Co-operation Laboratory on Signal Transduction, Eastern Hepatobiliary Surgery Institute/National Center for Liver Cancer, Naval Medical University. 225 Changhai Road, 200438 Shanghai, China. (1)
Guangdong Provincial Key Laboratory of Malignant Tumor Epigenetics and Gene Regulation, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, China 510120. (1)
Hunan Children’s Hospital (1)
Hunan Institute of Animal and Veterinary Science (1)
Institute of Biothermal Science and Technology, School of Medical Instruments and Food Engineering, University of Shanghai for Science and Technology (1)
Jinan University (1)
Key Laboratory of Ocular Fundus Diseases, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
Nanjing Medical University (1)
National Center for Protein Sciences (The PHOENIX center, Beijing) (1)
National Glycoengineering Research Center, Shandong University, Qingdao, Shandong, China (1)
Peking University Institute of Advanced Agricultural Sciences, (1)
Pfizer, INC. (1)
Research Center for Parasites & Vectors, College of Veterinary Medicine, Hunan Agricultural University, Changsha 410128, PR China (1)
School of Pharmaceutical Sciences, Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang, P. R. China (1)
State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Science, Hunan Normal University, Changsha, 410081, P. R. China. (1)
State Key Laboratory of Pharmaceutical Biotechnology, Jiangsu Key Laboratory of Molecular Medicine, Medical School of Nanjing University, Nanjing, China. (1)

Tags

xref:PubMed:21345178 (1)
pathogen (1)
pathogen:bacterium (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Quantitative analysis of wild type and MeCP2-/y mice hippocampus miRNAs using next generation sequencing

To determine whether the miRNA expression profile is altered by MeCP2, we performed Solexa-based RNA sequencing(RNA-seq) to assess global changes in the expression pattern of miRNAs caused by the loss of MeCP2 in mecp2 null (knockout[KO]) mice (Chen et al., 2001). Hippocampus miRNA profiles of 30-da...

ORGANISM(S): Mus musculus

2016-08-08 | E-GEOD-59029 | biostudies-arrayexpress

Multiple biochemical indices and metabolomics of Clonorchis sinensis provide a novel interpretation of biomarkers

BACKGROUND: Clonorchiasis, an infectious disease caused by the liver fluke Clonorchis sinensis, may lead to the development of liver and gallbladder diseases, and even cholangiocarcinoma (CCA). However, the pathogenesis, host-pathogen interaction, and diagnostic markers ...

2022-06-24 | MTBLS3306 | MetaboLights

Effects of vitamins C and E supplementation combined with 12-week resistance training in older women with sarcopenia: A randomized, double-blind, placebo-controlled trial.

Not available

S-EPMC12384908 | biostudies-literature

Acupressure versus parecoxib sodium in acute renal colic: A prospective cohort study.

Not available

S-EPMC9868725 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

2024-09-26 | MTBLS7986 | MetaboLights

Abnormal lacuno-canalicular network and negative correlation between serum osteocalcin and Cobb angle indicate abnormal osteocyte function in adolescent idiopathic scoliosis.

Not available

S-EPMC6894095 | biostudies-literature