Qiu R R - OmicsDI

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Unknown (5362)
Proteomics (114)
Transcriptomics (96)
Metabolomics (25)
Genomics (10)

Organisms

Homo sapiens (95)
Mus musculus (41)
Escherichia coli (7)
Saccharomyces cerevisiae (7)
Arabidopsis thaliana (5)
Oryza sativa (4)
Thermotoga maritima MSB8 (3)
Rattus norvegicus (3)
Bradyrhizobium diazoefficiens USDA 110 (2)
Geobacter sulfurreducens PCA (2)
Citrus reticulata (2)
Macaca mulatta (2)
Vitis vinifera (2)
Oryza sativa Japonica Group (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Bos taurus (2)
Eucalyptus nitens (1)
Vitis aestivalis (1)
Bos grunniens (1)
unidentified microorganism (1)
Vitis sp. cv. 'Norton' (1)
Cunninghamia lanceolata (1)
Yersinia pestis (1)
Dickeya dadantii (1)
Macaca fascicularis (1)
Glycine max (1)
Escherichia coli K-12 (1)
Sus scrofa (1)
Chromochloris zofingiensis (1)
Dimocarpus longan (1)

Organisms

Yersinia pestis (1)

Repository

biostudies-arrayexpress (100)
pride (86)
MetaboLights (25)
iProX (24)
EGA (4)
MassIVE (4)
ENA (2)

Tissue

Cell culture (21)
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Whole body (4)
Adipose tissue (2)
Blood (2)
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Cerebrospinal fluid (1)
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Escherichia coli metabolite (1)
HCT-116 cell (1)

Disease

Colon cancer (5)
Acute leukemia (3)
Breast cancer (3)
Disease free (3)
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Malignant neoplasm of ovary (2)
Stomach cancer (2)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
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Charcot-Marie-Tooth disease (1)
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Lung carcinoma (1)
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Metabolic dysfunction-associated steatotic liver disease (1)
Obesity (1)
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Prostate cancer (1)
Renal cell carcinoma (1)
Severe acute respiratory syndrome (1)
Skin amelanotic melanoma (1)
Wiskott-Aldrich syndrome (1)

Technology Type

Mass Spectrometry (86)
Shotgun proteomics (40)
Mass spectrometry (18)
Data-dependent acquisition (9)
Affinity purification coupled with mass spectrometry proteomics (8)
Bottom-up proteomics (7)
Gel-based experiment (7)
SWATH MS (6)
Top-down proteomics (6)
Mass spectrometry assay (5)
Proteogenomics (4)
NMR spectroscopy (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
All-ion fragmentation (1)
Data-independent acquisition (1)
DiaPASEF (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - reverse phase (13)
Illumina HiSeq 2500 (2)
Bruker (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
418 [Affymetrix] (1)
Illumina NovaSeq 6000 (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
TimsTOF HT (1)
TripleTOF 5600 (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2025 (25)
2023 (25)
2024 (21)
2014 (19)
2015 (18)
2026 (17)
2022 (17)
2010 (13)
2012 (12)
2021 (12)
2013 (11)
2011 (8)
2008 (7)
2020 (6)
2016 (5)
2009 (5)
2005 (5)
2019 (5)
2018 (5)
2017 (2)
2006 (1)

CHEBI ID

CHEBI:17368 (12)
CHEBI:17895 (12)
CHEBI:16919 (11)
CHEBI:16015 (10)
CHEBI:16857 (10)
CHEBI:17191 (10)
CHEBI:17203 (10)
CHEBI:17295 (10)
CHEBI:18050 (10)
CHEBI:15354 (9)
CHEBI:16335 (9)
CHEBI:16467 (9)
CHEBI:16643 (9)
CHEBI:16704 (9)
CHEBI:17568 (9)
CHEBI:18183 (9)
CHEBI:7916 (9)
CHEBI:15741 (8)
CHEBI:15843 (8)
CHEBI:15891 (8)
CHEBI:15971 (8)
CHEBI:16027 (8)
CHEBI:16040 (8)
CHEBI:16196 (8)
CHEBI:16977 (8)
CHEBI:17053 (8)
CHEBI:17596 (8)
CHEBI:18019 (8)
CHEBI:30769 (8)
CHEBI:48131 (8)

Metabolite Name

Inosine (9)
Creatine (8)
Creatinine (7)
L-Phenylalanine (7)
L-Tyrosine (7)
Uridine (7)
Adenosine (6)
Cytosine (6)
Guanine (6)
L-Threonine (6)
Taurine (6)
Trigonelline (6)
Uracil (6)
Adenine (5)
Anserine (5)
Choline (5)
Coumarin (5)
Diethanolamine (5)
Glycerophosphocholine (5)
Hypoxanthine (5)
Indole (5)
L-Asparagine (5)
L-Histidine (5)
L-Leucine (5)
Maltotriose (5)
Ornithine (5)
PC(16:0/16:0) (5)
4-Hydroxybenzaldehyde (4)
Acetylcholine (4)
Ala-Leu (4)

First Public Date

2024 (1)
2014 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (61)
RNA-seq of coding RNA (12)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
Other (4)
Unknown experiment type (3)
ChIP-seq (3)
RNA-seq of non coding RNA (3)
Comparative genomic hybridization by array (2)
ChIP-chip by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (915)
2022 (736)
2024 (674)
2023 (662)
2021 (571)
2020 (369)
2019 (252)
2018 (242)
2016 (173)
2015 (161)
2017 (158)
2026 (139)
2014 (108)
2013 (82)
2012 (49)
2011 (44)
2010 (37)
2008 (26)
2009 (23)
2007 (16)
2005 (9)
2004 (6)
2006 (3)
2003 (3)
2002 (1)
2001 (1)
1998 (1)
1997 (1)

Lab affiliation

Yazhouwan National Laboratory, Sanya 572024, China (3)
School of Optometry, The Hong Kong Polytechnic University (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, Jiangsu,China. (2)
The Second Affiliated Hospital Zhejiang University School of Medicine (2)
1)Chongqing Medical University;2) Chongqing Key Laboratory of Translational Research for Cancer Metastasis and Individualized Treatment, Chongqing University Cancer Hospital (1)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
Associate Professor, Cedars-Sinai Medical Center, Surgery (1)
Biological Sciences, University of Southampton (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)
Cedars-Sinai Medical Center (1)
Chinese Academy of Inspection and Quarantine (1)
City University of New York (CUNY) Hunter College, Chair of the Molecular Cellular and Developmental PhD subprogram at the CUNY Graduate Center (1)
Clinical Medical Research Center, The Second Clinical Medical College of Jinan University (Shenzhen People’s Hospital), Shenzhen, Guangdong;Department of Nephrology, The University of Hong Kong-Shenzhen Hospital, Shenzhen, Guangdong (1)
College of Agronomy, Northwest A&F University, Shaanxi, Yangling 712100, China. (1)
College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, Jiangsu, P.R. China (1)
College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China. (1)
Debora Bonenfant, Novartis Institutes for Biomedical research, Basel, Switzerland (1)
Department of Biochemistry, The University of Western Ontario, London, Ontario, Canada. (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (1)
Department of Chemistry, Columbia University, New York, NY 10027 (1)
Department of Chemistry, The Scripps Research Institute, Jupiter, FL 33458, USA (1)
Department of Gastroenterology, the first affiliated hospital of Nanchang University. (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, and Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education (1)
Department of Molecular Medicine The Scripps Research Institute (1)
Department of Neurology, Mental and Neurological Disease Research Center, the Third Affiliated Hospital of Sun Yat-sen University (1)
Department of Neurology, Shandong Provincial Hospital affiliated to Shandong University, No. 324 Jingwuweiqi Road, Jinan, 250021, Shandong, P. R. China. (1)
Department of Pediatric Pulmonology and Immunology, West China Second University Hospital, Sichuan University, Chengdu, China (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)

Tags

xref:PubMed:21345178 (1)
pathogen (1)
pathogen:bacterium (1)

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Quantitative proteomics reveals that distant recurrence-associated protein R-Ras and Transgelin predict post-surgical survival of colorectal cancer Stage III patients

Surgical resection is the major clinical intervention for Stage III colorectal cancer (CRC) currently. However, as much as 30.8% of the patients who had ever taken curative resection came out of recurrence eventually. Therefore, to facilitate formulating effective treatment plans, there is an intens...

ORGANISM(S): Homo sapiens (Human)

2016-06-20 | PXD002903 | Pride

Multiple biochemical indices and metabolomics of Clonorchis sinensis provide a novel interpretation of biomarkers

BACKGROUND: Clonorchiasis, an infectious disease caused by the liver fluke Clonorchis sinensis, may lead to the development of liver and gallbladder diseases, and even cholangiocarcinoma (CCA). However, the pathogenesis, host-pathogen interaction, and diagnostic markers ...

2022-06-24 | MTBLS3306 | MetaboLights

The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.

Not available

S-EPMC5957072 | biostudies-literature

The differential effects of tumor burdens on predicting the net benefits of ssCART-19 cell treatment on r/r B-ALL patients.

Not available

S-EPMC8748521 | biostudies-literature

Improved efficacy and safety of zanubrutinib versus ibrutinib in patients with relapsed/refractory chronic lymphocytic leukemia (R/R CLL) in China: a subgroup of ALPINE.

Not available

S-EPMC11512864 | biostudies-literature

CaZingipain2 Acts Positively in Pepper (Capsicum annuum L.) Immunity against R. solanacearum.

Not available