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TranscriptomicsQuantitative assessment of single-cell RNA sequencing methods
We generated single-cell transcriptomes from a large number of single cells using several commercially available platforms, in both microliter and nanoliter volumes, and compared performance between them. We benchmarked each method to conventional RNA-seq of the same sample using bulk total RNA, as ...
ORGANISM(S): Homo sapiens 
2013-10-20 | E-GEOD-51254 | biostudies-arrayexpress
TranscriptomicsHigh throughput quantitative whole transcriptome analysis of distal mouse lung epithelial cells from various developmental stages (E14.5, E16.5, E18.5 and adult)
We used microfluidic single cell RNA-seq on 198 individual mouse lung epithelial cells at 4 different stages throughout development to measure the transcriptional states which define the developmental and cellular hierarchy of the distal mouse lung epithelium. We classified 80 cells comprising the d...
ORGANISM(S): Mus musculus 
2014-04-08 | E-GEOD-52583 | biostudies-arrayexpress
ModelsBalagaddé2008_E_coli_Predator_Prey
This is the reduced model described in the article: A synthetic Escherichia coli predator–prey ecosystem Balagaddé FK, Song H, Ozaki J, Collins CH, Barnet M, Arnold FH, Quake SR, You L.Mol Syst Biol. 2008;4:187. Epub 2008 Apr 15. PMID: 18414488; DOI:10.1038/msb.2008.24 ...
2024-09-02 | BIOMD0000000296 | BioModels
GenomicsGenetic measurement of memory B-cell recall using antibody repertoire sequencing

We developed an improved high throughput sequencing approach to measure the quantities and sequences of the repertoire of antibody heavy chain RNA in a blood sample. Using this approach we analyzed the antibody repertoire in response to yearly vaccinations with influenza vaccines TIV and LAIV in ...

phs000656.v1.p1 | EGA
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