Quantitative microscopy

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Unknown (6619)
Proteomics (300)
Transcriptomics (285)
Genomics (158)
Metabolomics (20)
Other (8)
Models (7)
Methylation profiling (2)
Multiomics (1)

Organisms

Homo sapiens (131)
Mus musculus (112)
Rattus norvegicus (15)
Caenorhabditis elegans (12)
Saccharomyces cerevisiae (11)
Staphylococcus aureus (5)
Arabidopsis thaliana (4)
Schizosaccharomyces pombe (4)
Streptococcus pneumoniae D39 (3)
Escherichia coli (3)
Streptococcus mutans (2)
Drosophila virilis (2)
Zea mays (2)
Bacillus subtilis (2)
Vibrio cholerae (2)
Pseudomonas aeruginosa (2)
Drosophila melanogaster (2)
Danio rerio (2)
Staphylococcus aureus subsp. aureus Mu50 (2)
Methanobrevibacter ruminantium (1)
Waddlia chondrophila (1)
Streptococcus sanguinis SK36 (1)
Epinephelus tauvina (1)
Shigella sonnei (1)
Clostridium perfringens (1)
Cichorium intybus (1)
Bifidobacterium breve UCC2003 (1)
Acanthamoeba polyphaga mimivirus (1)
Leishmania donovani (1)
Notophthalmus viridescens (1)

Organisms

Mus musculus (33)
Homo sapiens (28)
Rattus norvegicus (4)
Saccharomyces cerevisiae (3)
Paracentrotus lividus (2)
Porphyromonas gingivalis ATCC 33277 (2)
Carica papaya (1)
Xenopus laevis (1)
Caenorhabditis elegans (1)
Bubalus bubalis (1)
Ovis aries (1)
Staphylococcus aureus (1)
Vitis vinifera (1)
Arabidopsis thaliana (1)
synthetic construct (1)

Repository

biostudies-arrayexpress (258)
pride (228)
ENA (117)
geo (71)
iProX (30)
MassIVE (28)
MetaboLights (20)
BioModels (7)
jPOST (7)
EGA (6)
PAXDB (6)
GPMDB (3)

Tissue

Cell culture (38)
Brain (16)
Blood plasma (11)
Heart (9)
Epithelial cell (8)
Plant cell (7)
Blood (6)
Liver (6)
Permanent cell line cell (6)
Whole body (6)
Leaf (5)
Blood platelet (4)
Fibroblast (4)
Hepatocyte (4)
Root (4)
Cell suspension culture (3)
Extracellular vesicle (3)
Haploid cell (3)
HeLa cell (3)
Kidney (3)
Oligodendrocyte (3)
Placenta (3)
Primary cell (3)
Stem cell (3)
T cell (3)
Blood cell (2)
Bone marrow (2)
Cerebrospinal fluid (2)
Colon (2)
Eye (2)

Disease

Breast cancer (7)
Disease free (7)
Not Available (3)
Normal (2)
Alzheimer's disease (2)
COVID-19 (2)
Cardiovascular system disease (2)
Malaria (2)
Parkinson's disease (2)
Type 2 diabetes mellitus (2)
Arrhythmias and right ventricular dysfunction (1)
MAS (1)
Resistant (1)
Obesity (1)
Acute leukemia (1)
Alveolar soft part sarcoma (1)
Alzheimer's disease 18 (1)
Aortic valve stenosis (1)
Brain cancer (1)
Cervix carcinoma (1)
Chikungunya (1)
Exfoliation syndrome (1)
Glaucoma (1)
Glioblastoma (1)
Heart failure (1)
Huntington Disease (1)
Influenza (1)
Intracerebral hemorrhage (1)
Long COVID (1)
Lung cancer (1)

Technology Type

Mass Spectrometry (228)
Shotgun proteomics (133)
Bottom-up proteomics (52)
Data-dependent acquisition (21)
Data-independent acquisition (20)
Affinity purification coupled with mass spectrometry proteomics (16)
Mass spectrometry (12)
SWATH MS (11)
Mass spectrometry assay (7)
Gel-based experiment (7)
Top-down proteomics (6)
HDMSE (5)
DiaPASEF (3)
Affinity proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
MSE (2)
SRM/MRM (2)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
All-ion fragmentation (1)

Instrument Platform

NextSeq 500 (7)
Illumina NovaSeq 6000 (6)
Q Exactive (5)
Orbitrap Eclipse (4)
Illumina HiSeq 2000 (3)
Instrument (3)
LTQ Orbitrap Velos (3)
Orbitrap Fusion (3)
Q Exactive HF-X (3)
Illumina NovaSeq X (2)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
Illumina HiSeq 4000 (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion Lumos (2)
Q Exactive Plus (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
Covaris S2 (1)
None (1)
Fujix BAS 1000 (1)
GCS3000 (1)
Affymetrix HG-U133 Plus 2.0, fluidics sstation 450 (1)
Nanodrop N1000 spectrophotometer (1)
ScanArray [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq 3000 (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
LTQ Orbitrap (1)

Publication Date

2026 (62)
2024 (51)
2025 (51)
2022 (51)
2023 (42)
2013 (36)
2021 (35)
2010 (34)
2011 (32)
2016 (30)
2012 (30)
2018 (28)
2020 (27)
2019 (27)
2008 (26)
2015 (24)
2014 (21)
2009 (16)
2017 (12)
2007 (7)
2005 (5)
2006 (4)
2004 (2)
2003 (1)

UNIPROT ID/AC

4513.MLOC_10050.1 (4)
4513.MLOC_11337.1 (4)
4513.MLOC_12451.3 (4)
4513.MLOC_12540.1 (4)
4513.MLOC_13014.1 (4)
4513.MLOC_1306.2 (4)
4513.MLOC_13372.1 (4)
4513.MLOC_14606.2 (4)
4513.MLOC_14794.1 (4)
4513.MLOC_14971.1 (4)
4513.MLOC_16236.1 (4)
4513.MLOC_16279.1 (4)
4513.MLOC_16373.1 (4)
4513.MLOC_16646.2 (4)
4513.MLOC_18019.1 (4)
4513.MLOC_19829.1 (4)
4513.MLOC_20396.2 (4)
4513.MLOC_20762.1 (4)
Q8K4S1 (1)
O43526 (1)
O88944 (1)
O95257 (1)
P24522 (1)
O75293 (1)
P38936 (1)
P29992 (1)
Q13315 (1)
Q16539 (1)
P04637 (1)
Q00987 (1)

CHEBI ID

CHEBI:29016 (7)
CHEBI:17822 (6)
CHEBI:25094 (6)
CHEBI:22653 (6)
CHEBI:26986 (6)
CHEBI:16811 (6)
CHEBI:27266 (6)
CHEBI:27897 (6)
CHEBI:26271 (5)
CHEBI:18132 (5)
CHEBI:16595 (2)
CHEBI:18348 (2)
CHEBI:43000 (1)
CHEBI:30111 (1)
CHEBI:38322 (1)
CHEBI:38309 (1)
CHEBI:5235 (1)
CHEBI:28874 (1)
CHEBI:30212 (1)
CHEBI:25107 (1)
CHEBI:26523 (1)
CHEBI:26034 (1)
CHEBI:18420 (1)
CHEBI:18035 (1)
CHEBI:17526 (1)
CHEBI:16749 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:15422 (1)
CHEBI:16991 (1)

Metabolite Name

Hypoxanthine (5)
Valine (4)
Pyridoxamine (4)
Asparagine (4)
Guanine (4)
NADH (4)
Creatine (4)
5,6-Dihydroxyindole-2-Carboxylic Acid (3)
D-Glucosamine (3)
Palmitoyl ethanolamide (3)
N6,N6,N6-Trimethyl-L-lysine (3)
Histidine (3)
Glycine (3)
NAD+ (3)
Uracil (3)
Propionylcarnitine (3)
Thymine (3)
N6-Acetyl-L-lysine (3)
ADP (3)
Putrescine (3)
Androsterone (3)
Dihydrothymine (3)
Pantothenic acid (3)
L-Histidine (3)
Acetylcholine (3)
Nicotinamide (3)
Indole (3)
Methionine (3)
Choline (3)
Pipecolic acid (3)

First Public Date

2025 (23)
2014 (18)
2022 (16)
2026 (12)
2024 (9)
2023 (7)
2021 (7)
2020 (6)
2018 (5)
2017 (5)
2019 (4)
2016 (2)
2015 (2)
2013 (1)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (2)

Lab affiliation

German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
USDA-ARS (4)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (2)
Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria (2)
Department of Molecular Biology, Princeton University, USA (2)
Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
Neuroproteomics Group Department of Molecular Neurobiology Max Planck Institute for Multidisciplinary Sciences Hermann-Rein-Str. 3 37075 Goettingen Germany (2)
Plant Biology (2)
School of Integrative Plant Science Plant Biology Section, Cornell University (2)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (2)
University of Modena and Reggio Emilia (2)
1 Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec, Canada. 2 Department of Chemistry, Université de Montréal, Montréal, Québec, Canada. 3 Department of Biochemistry and Molecular Medicine, Université de Montréal, Montréal, Québec, Canada. (1)
1. Department of Paediatrics, University Hospital of North Norway, Tromsø, Norway 2 Paediatric Research Group, Department of Clinical Medicine, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway. (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1. German Cancer Consortium (DKTK) partner site Freiburg, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany 2. Department of Urology, Medical Center-University of Freiburg, 79106 Freiburg, Germany (1)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
1.Department of Molecular Biology and Howard Hughes Medical Institute, Massachusetts General Hospital, Boston, MA 02114, USA, 2.Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA, 3.Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA. (1)
1Laboratory of Cytometry, Nencki Institute of Experimental Biology, Polish Academy of Sciences, Warsaw, Poland (1)
1Research Institute of the McGill University Health Centre, Montreal, QC, Canada 2Department of Pathology, McGill University, Montreal, QC, Canada 3Gerald Bronfman Department of Oncology, McGill University, Montreal, QC, Canada (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Angiogenesis Laboratory, Centro Cardiovascular da Universidade de Lisboa (CCUL@RISE), Lisbon School of Medicine of the Universidade de Lisboa; Lisbon, 1649-028, Portugal (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine (24.6.36) University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
Babraham Institute (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) (1)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (1)
Biomolecular Mass Spectrometry and Proteomics, Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, 3584 CH Utrecht, the Netherlands (1)
Biomolecular mass spectrometry and proteomics, Utrecht University, Utrecht, The Netherlands (1)
Biozentrum, University of Basel, Switzerland (1)

IsPrivate

False (7)

Classification

bacteria (3)

Modification

Not available (3)

Study type

Transcription profiling by array (163)
ChIP-seq (25)
RNA-seq of coding RNA (25)
RNA-seq of coding RNA from single cells (6)
RNA-seq of non coding RNA (5)
Comparative genomic hybridization by array (4)
Unknown experiment type (3)
Transcription profiling by tiling array (3)
DNA-seq (3)
Methylation profiling by array (3)
Transcription profiling by SAGE (2)
Human - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
Transcription profiling by RT-PCR (2)
Other (2)
Cell line - Single-cell sequencing (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (674)
2025 (657)
2021 (635)
2023 (627)
2024 (565)
2020 (542)
2019 (489)
2018 (426)
2017 (357)
2016 (340)
2015 (317)
2014 (253)
2013 (197)
2012 (151)
2011 (141)
2010 (123)
2026 (99)
2009 (80)
2008 (73)
2006 (34)
2007 (32)
2005 (24)
2003 (13)
2004 (10)
2002 (9)
2001 (3)
2000 (3)
1999 (1)
1998 (1)

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Highly sensitive quantitative phase microscopy and deep learning aided with whole genome sequencing for rapid detection of infection and antimicrobial resistance

PRJEB59337 | ENA

A New Quantitative Metric for Precise Classification of Diabetic Podocyte Injury Using Scanning Electron Microscopy.

Not available

S-EPMC12693405 | biostudies-literature

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

C4 grasses, such as maize (Zea mays), have high photosynthetic efficiency through combined biochemical and structural adaptations.C4 photosynthesis is established along the developmental axis of the leafblade, leading from an undifferentiated leaf base just above the ligule into highly specialized m...

ORGANISM(S): Zea mays (Maize)

2023-10-12 | PXD046098 | Pride

Gene expression profile in pelvic organ prolapse

Introduction and Hypothesis: Identify processes contributing to pelvic organ prolapse (POP) by transcriptional profiling of pelvic connective tissue in conjunction with light microscopy. Methods: We performed a frequency matched case-control study of women undergoing hysterectomy. Total RNA, extract...

ORGANISM(S): Homo sapiens

2008-09-19 | E-GEOD-12852 | biostudies-arrayexpress

Bidirectional quantitative scattering microscopy.

Not available

S-EPMC12618536 | biostudies-literature

Subcellular antibiotic visualization reveals a dynamic drug reservoir in infected macrophages

Tuberculosis, caused by the intracellular pathogen Mycobacterium tuberculosis, remains the world's deadliest infectious disease. Sterilizing chemotherapy requires at least 6 months of multidrug therapy. Difficulty visualizing the subcellular localization of antibiotics in infected host cells means t...

2020-12-07 | MTBLS959 | MetaboLights

Quantitative method for estimating stain density in electron microscopy of conventionally prepared biological specimens.

Not available

S-EPMC7530943 | biostudies-literature

CENP-A (Cnp1)

ChIP-seq of CENP-A in S. pombe

ORGANISM(S): Schizosaccharomyces pombe

2013-01-04 | E-MTAB-1435 | biostudies-arrayexpress

Quantitative Histopathology of Stained Tissues using Color Spatial Light Interference Microscopy (cSLIM).

Not available

S-EPMC6789107 | biostudies-literature

Label-free microscopy for virus infections.