Quantitative-ms

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Unknown (5349)
Proteomics (5054)
Transcriptomics (1216)
Metabolomics (354)
Genomics (192)
Other (32)
Models (19)
Multiomics (5)
Genomic (1)
Methylation profiling (1)

Organisms

Homo sapiens (632)
Mus musculus (293)
Arabidopsis thaliana (232)
Caenorhabditis elegans (108)
Rattus norvegicus (53)
Drosophila melanogaster (41)
Saccharomyces cerevisiae (31)
Candida albicans (19)
Escherichia coli (19)
Bos taurus (13)
Gallus gallus (13)
Danio rerio (9)
Schizosaccharomyces pombe (9)
Xenopus laevis (8)
Mycobacterium tuberculosis (8)
Thermus thermophilus HB8 (6)
Apis mellifera (5)
Escherichia coli K-12 (5)
Canis lupus familiaris (4)
Pimephales promelas (4)
Geobacter sulfurreducens (4)
Bordetella pertussis (4)
Mammalia (3)
Sus scrofa (3)
Rattus (2)
Oryctolagus cuniculus (2)
Influenza A virus (A/X-31(H3N2)) (1)
Murinae (1)
Chordata (1)
Arabidopsis (1)

Organisms

Mus musculus (26)
Homo sapiens (21)
Sanghuangporus sanghuang (7)
Rattus norvegicus (6)
Xenopus laevis (3)
Oncorhynchus mykiss (2)
Saccharomyces cerevisiae (2)
Human adenovirus 7 (1)
Aspergillus nidulans (1)
Pseudomonas aeruginosa PAO1 (1)
Enterococcus faecium (1)
Campylobacter jejuni (1)
Escherichia coli (1)
Cataglyphis nodus (1)
Papaver (1)
Sicyos edulis (1)
Amaranthus hypochondriacus (1)
Vallisneria natans (1)
Ruminiclostridium cellobioparum subsp. termitidis CT1112 (1)
Zymomonas mobilis (1)
Crotalinae (1)
Haemaphysalis longicornis (1)
Populus ussuriensis (1)
Pimephales promelas (1)
Oreochromis niloticus (1)
Brassica rapa subsp. pekinensis (1)
feces metagenome (1)
Ovis aries (1)
Vitis vinifera (1)
Drosophila melanogaster (1)

Repository

pride (4206)
biostudies-arrayexpress (1239)
MetaboLights (328)
MassIVE (294)
iProX (287)
ENA (125)
PeptideAtlas (104)
jPOST (101)
geo (57)
PanoramaPublic (41)
GPMDB (27)
GNPS (25)
PAXDB (20)
BioModels (19)
EGA (4)
dbGaP (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (836)
Brain (236)
Epithelial cell (220)
Blood plasma (161)
Liver (151)
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Plant cell (124)
Leaf (108)
Blood (102)
Heart (94)
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Blood serum (82)
Kidney (80)
T cell (80)
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Whole body (68)
Colon (65)
Blood cell (64)
Macrophage (60)
Cell suspension culture (56)
Root (56)
Primary cell (51)
Skin (49)
Stem cell (47)
B cell (46)
Others (29)
Plasma Non-glyco (2)
Blood (1)
Brain (1)
Urine (1)

Disease

Pancreatic ductal adenocarcinoma (17)
Normal (9)
Diffuse large B-cell lymphoma (2)
Head and neck squamous cell carcinoma (2)
Brugada syndrome (1)
Hyperparathyroidism (1)
Hypoparathyroidism (1)
Influenza (1)
Heart disease (1)
Burn injury (1)
Myeloid neoplasm (1)
Phyllodes tumor (1)
Post-stasis (1)
Precursor T lymphoblastic leukemia (1)
Invasive Ductal Carcinoma (1)
Colorectal cancer recurrence-free (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Infiltrating ductal carcinoma (1)
Xenografts with H1299 cell line (1)
Hodgkin lymphoma, mixed cellularity, stage IV (1)
Infected (1)
Teratozoospermia and infertility (1)
Malignant melanoma (1)
Infected (1)
IBDV infected (1)
These mice have a relatively normal first wave of spermatogenesis but never become fertile. Older animals show increased apoptosis of germ cells, increasing in severity as germ cell stage advances. (1)
Chronic lymphocytic leukemia (1)
Osteosarcoma (1)
Adenocarcinoma (1)
Nodal peripheral T-cell Lymphoma (1)

Technology Type

Mass Spectrometry (4207)
Shotgun proteomics (2357)
Bottom-up proteomics (808)
Data-dependent acquisition (461)
Affinity purification coupled with mass spectrometry proteomics (411)
SWATH MS (317)
Mass spectrometry (222)
Data-independent acquisition (216)
Gel-based experiment (195)
Top-down proteomics (113)
Mass spectrometry assay (101)
SRM/MRM (82)
Chemical cross-linking coupled with mass spectrometry proteomics (43)
All-ion fragmentation (30)
HDMSE (24)
MSE (21)
DiaPASEF (19)
Affinity proteomics (10)
Proteogenomics (10)
NMR spectroscopy (9)
Mass spectrometry imaging (8)
RNA mass spectrometry (6)
Immunopeptidomics (4)
Glycoproteomics (3)
NMR spectroscopy assay (2)
Metaproteomics (2)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (21)
BGISEQ-500 (18)
Illumina HiSeq 2500 (17)
Illumina HiSeq 2000 (14)
NextSeq 500 (11)
Illumina HiSeq 4000 (9)
GenePix 4000B [Axon Instruments] (6)
DNBSEQ-T7 (5)
Illumina MiSeq (5)
Axon GenePix 4000B scanning hardware (4)
NextSeq 550 (4)
Axon- GenePix4000B (3)
G2565AA DNA microarray scanner [Agilent] (2)
Chemostat (2)
Illumina Genome Analyzer II (2)
Scanning hardware (2)
Illumina NovaSeq X (2)
NextSeq 2000 (2)
TruSeq stranded Total RNA kit (1)
Described in protocol (1)
Linux (1)
Ribo-Zero Plant rRNA removal kit (Illumina); TruSeq Stranded Total RNA LT kit (Illumina) (1)
RNeasy Plant Mini Kit (QIAGEN) (1)
2D clinostat (1)
Affymetrix GeneChip (1)
QuantSeq 3’ mRNA-Seq Library Prep Kit FWD (Lexogen Gmbh, Vienna, Austria) (1)
Computer and Applied Biosystems 7500 Real Time PCR Systems thermal cycler (1)
Microarray scanner system (1)
Ultrospec 3000 (1)
Qiagen MinElute (1)

Publication Date

2026 (738)
2025 (690)
2022 (645)
2023 (599)
2024 (554)
2021 (502)
2020 (420)
2019 (355)
2018 (304)
2010 (300)
2016 (244)
2014 (230)
2017 (213)
2015 (182)
2012 (178)
2013 (165)
2011 (137)
2009 (83)
2008 (68)
2005 (32)
2006 (29)
2007 (27)
2004 (6)
2002 (1)
2027 (1)

UNIPROT ID/AC

14310_ARATH (4)
14332_ARATH (4)
14333_ARATH (4)
14335_ARATH (4)
14337_ARATH (4)
14339_ARATH (4)
1A110_ARATH (4)
1A112_ARATH (4)
2A5A_ARATH (4)
2A5B_ARATH (4)
2A5D_ARATH (4)
2A5G_ARATH (4)
2A5Z_ARATH (4)
2AAA_ARATH (4)
2AAB_ARATH (4)
Q9LKL2 (2)
O81713 (2)
O15528 (1)
Q13950 (1)
O00300 (1)
Q9Y6Q6 (1)
O14788 (1)
P92973 (1)
P16220 (1)
P01270 (1)
Q93WK5 (1)
Q8L500 (1)
Q9SQI2 (1)
P10415 (1)
P01137 (1)

ENSEMBL ID

ENSECAG00000004960 (51)
ENSECAG00000009556 (51)
ENSECAG00000014414 (51)
ENSECAG00000021580 (51)
ENSECAG00000001810 (50)
ENSECAG00000004973 (50)
ENSECAG00000011847 (50)
ENSECAG00000019927 (50)
ENSECAG00000021499 (50)
ENSECAP00000007368 (50)
ENSECAP00000013223 (50)
ENSECAG00000006095 (49)
ENSECAG00000009752 (49)
ENSECAG00000014858 (49)
ENSECAP00000003495 (49)
ENSECAG00000000207 (48)
ENSECAG00000010481 (46)
ENSECAP00000007504 (45)
ENSECAG00000000548 (44)
ENSECAG00000012096 (44)
ENSECAG00000004201 (43)
ENSECAG00000024571 (43)
ENSECAG00000016475 (42)
ENSECAG00000019900 (42)
ENSECAG00000015581 (41)
ENSECAG00000000841 (40)
ENSECAG00000003345 (40)
ENSECAG00000014197 (40)
ENSECAG00000021116 (40)
ENSECAG00000021882 (40)

CHEBI ID

CHEBI:15428 (82)
CHEBI:30769 (81)
CHEBI:15741 (80)
CHEBI:18012 (70)
CHEBI:16335 (65)
CHEBI:28044 (64)
CHEBI:30915 (62)
CHEBI:16708 (62)
CHEBI:16704 (60)
CHEBI:17822 (57)
CHEBI:17489 (25)
CHEBI:29108 (3)
CHEBI:33699 (2)
CHEBI:24367 (1)
CHEBI:52254 (1)
CHEBI:52217 (1)
CHEBI:17823 (1)
CHEBI:18272 (1)
CHEBI:15638 (1)
CHEBI:1989 (1)
CHEBI:15635 (1)
CHEBI:17230 (1)
CHEBI:17622 (1)
CHEBI:18406 (1)
CHEBI:15637 (1)
CHEBI:15641 (1)
CHEBI:15633 (1)
CHEBI:35780 (1)
CHEBI:30751 (1)
CHEBI:16474 (1)

Metabolite Name

Adenosine (57)
Hypoxanthine (52)
Adenine (51)
Uridine (49)
Creatine (49)
Uracil (48)
Creatinine (48)
Inosine (45)
Glycine (44)
L-Tryptophan (44)
Betaine (42)
Choline (42)
Taurine (42)
Guanosine (42)
L-Phenylalanine (42)
Ornithine (41)
Succinic acid (40)
Phenylalanine (40)
L-Tyrosine (40)
Valine (39)
Citric acid (39)
Cytidine (39)
Xanthine (39)
Methionine (38)
Proline (38)
Spermidine (37)
Threonine (36)
L-Histidine (36)
Tryptophan (36)
L-Methionine (36)

First Public Date

2024 (17)
2014 (17)
2021 (15)
2026 (13)
2019 (13)
2025 (12)
2023 (12)
2022 (9)
2020 (7)
2017 (4)
2015 (3)
2016 (2)
2018 (1)

Modelling Approach

Ordinary differential equation model (18)
Constraint-based model (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (20)
Mendel University in Brno (14)
USDA-ARS (14)
EDyP (10)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (8)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (8)
Center for Neuroscience and Cell Biology – University of Coimbra (8)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (8)
Keck MS & Proteomics Resource Yale School of Medicine (8)
Masaryk University, Faculty of Science (8)
Massachusetts Institute of Technology (8)
University of Washington (8)
Center for Structural Biology, Center for Cancer Research, National Cancer Institute (NCI), National Institutes of Health, Frederick, MD 21702-1201, USA (7)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (7)
Cornell University (7)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (7)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (7)
Liverpool John Moores University (7)
Professor, Deputy Head of Centre Novo Nordisk Foundation Center for Protein Research University of Copenhagen Copenhagen, DENMARK (7)
Cambridge Institute for Medical Research, University of Cambridge (6)
David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Head of the Curie Institute Mass Spectrometry Platform (6)
Carnegie Mass Spectrometry Facility (5)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (5)
Department of Molecular Biology, Princeton University, USA (5)
Fraunhofer Institute for Molecular Biology and Applied Ecology IME Auf dem Aberg 1 | 57392 Schmallenberg | Germany (5)
Huazhong Agricultural University (5)
INEPCP FRCCP RAS, Moscow, Russia (5)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse (5)

IsPrivate

False (19)

Model Flag

Non Kinetic (1)

Classification

bacteria (4)
fungi (1)
viruses (1)

Modification

2x(15)N labeled L-lysine (15)
4x(15)N labeled L-arginine (12)
Not available (9)
4-tetrahydrothiazine-3-carboxylic acid (7)
N6 (7)
N6-dimethyl-L-lysine (7)
15.994915 (5)
57.021464 (5)
-17.026549 (3)
15.99491 (3)
4 (3)
42.010565 (3)
4x(2)H labeled dimethylated residue (3)
57.02146 (3)
-18.010565 (2)
127.063329 (1)
42.01056 (1)
45.029395 (1)
6x(2)H labeled dimethylated L-arginine (1)
79.966331 (1)
MTRAQ heavy (1)

Study type

Transcription profiling by array (723)
RNA-seq of coding RNA (147)
ChIP-chip by tiling array (115)
ChIP-seq (41)
Unknown experiment type (38)
Comparative genomic hybridization by array (37)
Other (24)
Methylation profiling by array (13)
RNA-seq of non coding RNA (13)
DNA-seq (10)
Genotyping by array (8)
RNA-seq of coding RNA from single cells (7)
ChIP-chip by array (6)
Transcription profiling by RT-PCR (5)
MicroRNA profiling by array (5)
Methylation profiling by high throughput sequencing (5)
Transcription profiling by tiling array (4)
RNA-seq of total RNA (4)
Human - High-throughput sequencing (3)
Genotyping by high throughput sequencing (3)
MeDIP-seq (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
ATAC-seq (2)
ChIP-chip by SNP array (1)
RNA-seq of non coding RNA from single cells (1)
Animal - One-color microarray (1)
Plant - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Plant - One-color microarray (1)

Release Date

2022 (644)
2021 (586)
2023 (573)
2025 (506)
2020 (462)
2024 (432)
2019 (389)
2010 (379)
2018 (337)
2015 (299)
2017 (292)
2016 (287)
2014 (260)
2012 (258)
2013 (235)
2011 (219)
2009 (132)
2008 (103)
2026 (74)
2007 (38)
2006 (37)
2005 (30)
2004 (9)
2003 (2)
2000 (2)
2002 (1)
1998 (1)

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Quantitative LC-MS study of compounds found predictive of COVID-19 severity and outcome

INTRODUCTION: Since the beginning of the SARS-CoV-2 pandemic in December 2019 multiple metabolomics studies have proposed predictive biomarkers of infection severity and outcome. Whilst some trends have emerged, the findings remain intangible and uninformative when it comes to n...

2024-04-23 | MTBLS7429 | MetaboLights

Absolute quantitative lipidomics reveals lipidome-wide alterations in aging brain (Mouse brain NEG UPLC-MS assay)

INTRODUCTION: The absolute quantitation of lipids at the lipidome-wide scale is a challenge but plays an important role in the comprehensive study of lipid metabolism.

OBJECTIVES: We aim to develop a high-throughput quantitative lipidomics approach to enab...

2018-08-03 | MTBLS495 | MetaboLights

Absolute quantitative lipidomics reveals lipidome-wide alterations in aging brain (Mouse brain POS UPLC-MS assay)

INTRODUCTION: The absolute quantitation of lipids at the lipidome-wide scale is a challenge but plays an important role in the comprehensive study of lipid metabolism.

OBJECTIVES: We aim to develop a high-throughput quantitative lipidomics approach to enab...

2018-08-03 | MTBLS562 | MetaboLights

Correlation Analysis of Expression Profile and Quantitative iTRAQ-LC-MS/MS Proteomics Reveals Resistance Mechanism Against TuMV in Chinese Cabbage (Brassica rapa ssp. pekinensis)

PRJNA637760 | ENA

Correlation Analysis of Expression Profile and Quantitative iTRAQ-LC-MS/MS Proteomics Reveals Resistance Mechanism Against TuMV in Chinese Cabbage (Brassica rapa ssp. pekinensis)

To better examine the molecular mechanisms behind the virus infection, we conducted a correlation analysis of RNA-Seq and quantitative iTRAQ-LC-MS/MS in TuMV-infected and in healthy Chinese cabbage leaves.

ORGANISM(S): Brassica rapa subsp. pekinensis

2020-08-07 | GSE151932 | GEO

Triple three-dimensional MS/MS spectrum facilitates quantitative ginsenosides-targeted sub-metabolome characterization in notoginseng.

Not available

S-EPMC11413663 | biostudies-literature

Quantitative LC-MS/MS Glycomic Analysis of Biological Samples Using AminoxyTMT.

Not available

S-EPMC5759044 | biostudies-literature

A Novel Hybrid LC-MS/MS Methodology for the Quantitative Bioanalysis of Antibody-siRNA Conjugates.

Not available

S-EPMC12444745 | biostudies-literature

High-throughput single-fly LC-MS/MS for quantitative profiling of biogenic amines in Drosophila.