Quinn K K - OmicsDI

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Unknown (1549)
Transcriptomics (29)
Genomics (20)
Proteomics (14)
Metabolomics (13)
Genomic (1)

Organisms

Homo sapiens (35)
Mus musculus (7)
Colinus virginianus (6)
Candida albicans (6)
Drosophila melanogaster (2)
Macaca mulatta (1)
Salmo salar (1)
Escherichia coli K-12 (1)
Arabidopsis thaliana (1)

Organisms

gut metagenome (1)

Repository

biostudies-arrayexpress (29)
EGA (18)
MetaboLights (12)
pride (11)
MassIVE (2)
ENA (2)
dbGaP (1)
GNPS (1)
PanoramaPublic (1)

Tissue

Brain (3)
Cell culture (3)
Blood (1)
Cerebrospinal fluid (1)
Kidney (1)
Liver (1)
Myeloid cell (1)
Testis (1)

Disease

Chronic myeloid leukemia (1)

Technology Type

Mass spectrometry (11)
Mass Spectrometry (11)
Shotgun proteomics (5)
Illumina HiSeq 2000 (4)
Bottom-up proteomics (4)
Data-independent acquisition (2)
Mass spectrometry assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
ScanArray Lite [PerkinElmer] (1)
Illumina Genome Analyzer IIx (1)
GenePix 4000B [Axon Instruments] (1)
Ion Torrent Proton (1)
LTQ FT (1)
MaXis (1)
Q Exactive (1)
Q Exactive HF (1)
TripleTOF 5600 (1)
Agilent 6520 QTOF (1)
Agilent 6545 QTOF (1)
Flow injection analysis MS - negative (1)
Flow injection analysis MS - positive (1)
LMJ-SSP/ESI MS (Imaging MS) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
MALDI MS (Imaging MS) (1)
MS Imaging - (1)
ThermoFinnigan LCQ Deca XP (1)
ThermoFinnigan LTQ (1)

Publication Date

2013 (8)
2023 (8)
2011 (7)
2018 (5)
2026 (5)
2016 (3)
2014 (3)
2007 (3)
2015 (2)
2010 (2)
2008 (2)
2022 (2)
2017 (1)
2024 (1)
2021 (1)
2025 (1)

CHEBI ID

CHEBI:15603 (3)
CHEBI:16359 (3)
CHEBI:16870 (3)
CHEBI:17895 (3)
CHEBI:28865 (3)
CHEBI:30769 (3)
CHEBI:35038 (3)
CHEBI:64563 (3)
CHEBI:116314 (2)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:15351 (2)
CHEBI:15422 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16002 (2)
CHEBI:16027 (2)
CHEBI:16108 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16349 (2)
CHEBI:16474 (2)
CHEBI:16551 (2)
CHEBI:16708 (2)
CHEBI:16908 (2)
CHEBI:17191 (2)
CHEBI:17203 (2)
CHEBI:17368 (2)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Adenosine (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Citric acid (2)
Cyclic AMP (2)
D-Glucose (2)
D-Sorbitol (2)
Dibutyl phthalate (DBP) (2)
Dodecanedioic acid (2)
Elaidic acid (2)
Guanine (2)
Hypoxanthine (2)
L-Citrulline (2)
L-Lactic acid (2)
L-Leucine (2)
L-Malic acid (2)
L-Proline (2)
L-Tyrosine (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NADH (2)
NADPH (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurine (2)

First Public Date

2025 (2)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2020 (168)
2021 (162)
2023 (149)
2022 (140)
2018 (128)
2025 (128)
2024 (124)
2019 (94)
2015 (73)
2016 (72)
2017 (62)
2014 (58)
2013 (47)
2012 (47)
2011 (46)
2026 (22)
2010 (14)
2009 (11)
2008 (9)
2006 (8)
2007 (5)
2005 (2)
2003 (2)
2001 (2)
2004 (1)
2002 (1)
2000 (1)
1998 (1)
1997 (1)

Lab affiliation

Associate Professor Bioinformatics, UCD School of Medicine, Conway Institute, Systems Biology Ireland, University College Dublin. (1)
Dana-Farber Cancer Institute (1)
Department of Pathology (1)
Department of Pharmacology, Northwestern University, Chicago, IL, USA (1)
Department of Pharmacology, Northwestern University, Chicago, IL, USA. (1)
Division of Genome Sciences and Cancer, The John Curtin School of Medical Research, The Australian National University, Canberra (1)
Environmental Laboratory US Army Engineer Research and Development Center Vicksburg, MS 39180, USA (1)
Functional Proteomics, ICR (1)
Newcastle University, Faculty of Medical Sciences, ICAMB NE2 4HH Newcastle Upon Tyne (1)
Science Director MRC PPU, School of Life Sciences, University of Dundee, UK. (1)
University of Edinburgh (1)

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Pharmacology and surface electrostatics of the K channel outer pore vestibule.

Not available

S-EPMC1784061 | biostudies-literature

NhaP1 is a K+(Na+)/H+ antiporter required for growth and internal pH homeostasis of Vibrio cholerae at low extracellular pH.

Not available

S-EPMC3949420 | biostudies-literature

A Prototypic Small Molecule Database for Bronchoalveolar Lavage-Based Metabolomics

The analysis of bronchoalveolar lavage fluid (BALF) using mass spectrometry-based metabolomics can provide insight into lung diseases, such as asthma. However, the important step of compound identification is hindered by the lack of a small molecule database that is specific for BALF. Here we descri...

2018-02-09 | MTBLS591 | MetaboLights

Helicobacter pylori antibiotic eradication coupled with a chemically defined diet in INS-GAS mice triggers dysbiosis and vitamin K deficiency resulting in gastric hemorrhage.

Not available

S-EPMC7524293 | biostudies-literature

Regulation and Levels of the Thylakoid K+/H+ Antiporter KEA3 Shape the Dynamic Response of Photosynthesis in Fluctuating Light.

Not available

S-EPMC4937787 | biostudies-literature

ChIP-on-chip of OmpR binding in Salmonella enterica serovar Typhimurium strain SL1344 and E.scherichia coli strain CSH50 at pH 7 and pH 4.5 including analysis of OmpR binding in SL1344 in the absence and presence of novobiocin (25 M-NM-

OmpR is a DNA binding protein belonging to the OmpR/EnvZ two component system. This system is known to sense changes in osmolarity in Escherichia coli. Recently, OmpR in Salmonella enterica serovar Typhimurium was found to be activated by acidic pH and DNA relaxation. In this study, ChIP-on-chip wa...

ORGANISM(S): Escherichia coli K-12

2014-03-27 | E-GEOD-49914 | biostudies-arrayexpress

Flavin-dependent thymidylate synthase: N5 of flavin as a Methylene carrier.

Not available

S-EPMC5728703 | biostudies-literature

Comparing the properties of traditional and novel approaches to the modified Rankin scale: Systematic review and meta-analysis.

Not available

S-EPMC11556649 | biostudies-literature

Serum potassium and glucose regulation in the ADDITION-Leicester screening study.

Not available

S-EPMC4390186 | biostudies-literature

Hyperkalemia excursions are associated with an increased risk of mortality and hospitalizations in hemodialysis patients.