R-cho - OmicsDI

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Aerococcus urinae NBRC 15544 = CCUG 36881 (57)
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Canis lupus familiaris (57)
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Halictus scabiosae (57)
Human immunodeficiency virus 1 (57)
Mesocricetus auratus (57)
Methylohalobius crimeensis 10Ki (57)
Miscanthus x giganteus (57)
Mus musculus (57)
Panicum virgatum (57)
Pseudomonas aeruginosa SJTD-1 (57)
Mus musculus (14)
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Hordeum vulgare (2)
Escherichia coli str. K-12 substr. MG1655 (2)
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Oncorhynchus mykiss (1)

Organisms

Oncorhynchus mykiss (1)
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Mus musculus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (74)
pride (57)
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Publication Date

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CHEBI ID

CHEBI:16449 (4)
CHEBI:16027 (3)
CHEBI:15428 (3)
CHEBI:27266 (3)
CHEBI:25017 (3)
CHEBI:25094 (3)
CHEBI:26271 (3)
CHEBI:18186 (3)
CHEBI:17200 (2)
CHEBI:16264 (2)
CHEBI:16695 (2)
CHEBI:17858 (2)
CHEBI:17345 (2)
CHEBI:15918 (2)
CHEBI:17361 (2)
CHEBI:16761 (2)
CHEBI:17992 (2)
CHEBI:18132 (2)
CHEBI:50621 (2)
CHEBI:17713 (2)
CHEBI:26836 (2)
CHEBI:17822 (2)
CHEBI:17964 (2)
CHEBI:16811 (2)
CHEBI:28683 (2)
CHEBI:17596 (2)
CHEBI:24813 (2)
CHEBI:16750 (2)
CHEBI:17234 (2)
CHEBI:82969 (2)

Metabolite Name

Valine (3)
Alanine (3)
Isoleucine (3)
Glycine (3)
Lysine (3)
Proline (3)
Threonine (3)
Phenylalanine (3)
Alanine (3)
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L-Alanine (2)
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Tyrosine (2)
Glycine (2)
2-[3-Hydroxy-5-(hydroxymethyl)-2-methyl-4-pyridinyl]-4-thiazolidinecarboxylic acid (1)

IsPrivate

False (2)

First Public Date

2023 (2)
2024 (1)
2021 (1)
2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (5)
ChIP-seq (4)
Methylation profiling by array (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Other (1)

Release Date

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2021 (329)
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2007 (15)
2006 (7)
2005 (7)
2001 (7)
2003 (5)
2004 (3)
2000 (3)
2002 (2)
1999 (2)
1997 (2)
1998 (1)

Lab affiliation

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea (3)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (2)
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 50463, Republic of Korea (2)
Mass Spectrometry Technology Access Center, McDonnell Genome Institute, Washington University School of Medicine (2)
lab (2)
Aalborg University (1)
Aikaterini Kontrogianni-Konstantopoulos, Ph.D. Professor of Biochemistry and Molecular Biology Director, Interdisciplinary Training Program in Muscle Biology Marlene and Stewart Greenebaum Comprehensive Cancer Center University of Maryland School of Medicine 108 N. Greene Street, 215A Baltimore, MD 21201 (1)
Broad Institute (1)
Cancer Science Institute of Singapore, National University of Singapore, Singapore (1)
Cell Culture Technology, Technical Faculty, Bielefeld University, Germany (1)
Cell culture technology, Technical Department, Bielefeld University, Bielefeld, Germany (1)
Cell culture technology, Technical faculty, Bielefeld University (1)
Center For Theragnosis Korea Institute of Science and Technology 5, Hwarang-ro 14-gil, Seongbuk-gu, Seoul (1)
Center for Biologics Evaluation and Research (CBER), U.S. Food and Drug Administration (FDA) (1)
Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University of London, London, UK (1)
Characterization and Comparability Lab, National Institute for Bioprocessing Research and Training - NIBRT, Dublin, Ireland (1)
Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Department of Basic and Clinical Neuroscience, King's College London, 125 Coldharbour Lane, SE5 9NU London (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, 262 Seongsanno, Seodaemun-Gu, Seoul 120-749, Korea. Tel.: +82-2-2123-2704; Fax: 82-2-362- 9897 (1)
Department of Biological Sciences, Korea Advanced Institute for Science and Technology (KAIST), Korea (1)
Department of Biotechnology, Graduate School of Engineering, The University of Osaka, Japan (1)
Department of Biotechnology, Institute of Bioprocess Science and Engineering, University of Natural Resources and Life Sciences Vienna (1)
Department of Biotechnology,Institute of Bioprocess Science and Engineering (IBSE), BOKU University (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Plant Biosience, Pusan National University, Miryang 50463, Republic of Korea (1)
Department of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL 2Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL (1)
Geisel School of Medicine at Dartmouth (1)
Georg-August-University Göttingen, Department of Molecular Microbiology and Genetics, Institute of Microbiology and Genetics (1)

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Expression data from malignant human B-cell cell lines

We used global gene expression profiles from human B-cell cell lines to generate gene expression signatures for prediction of response to the drugs cyclophosphamide, doxorubicin or vincristine. The signatures were validated in two publicly available clinical cohorts. Global gene expression data comb...

ORGANISM(S): Homo sapiens

2015-04-19 | E-GEOD-53798 | biostudies-arrayexpress

Development and blind clinical validation of a microRNA based predictor of response to treatment with R-CHO(E)P in DLBCL.

Not available

S-EPMC4333339 | biostudies-literature

Data on optimization of expression and purification of AIMP2-DX2 protein in Escherichia coli.

Not available

S-EPMC5361769 | biostudies-literature

Gene Expression in the Human Mammary Epithelium in response to consumption of high fat (H-FAT) and high carbohdyrate (H-CHO) diets.

Mammary gland (MG) de novo lipogenesis contributes significantly to milk fat in animals but little is known in humans. We hypothesized that de novo lipogenesis, as reflected by incorporation of 13C carbons from [U-13C]glucose into fatty acids (FAs) and glycerol in triglycerides (TG), will be greate...

ORGANISM(S): Homo sapiens

2014-05-19 | E-GEOD-51874 | biostudies-arrayexpress

The interplay between bicarbonate kinetics and gastrointestinal upset on ergogenic potential after sodium bicarbonate intake: a randomized double-blind placebo-controlled trial.

Not available

S-EPMC10151363 | biostudies-literature

Spatial proteomics reveals differences in the cellular architecture of antibody-producing CHO and plasma-cell derived cells

Most of the recombinant biotherapeutics employed today to combat severe illnesses e.g. various types of cancer or autoimmune diseases are produced by Chinese hamster ovary (CHO) cells. To meet the growing demand of these pharmaceuticals, CHO cells are under constant development in order to enhance t...

ORGANISM(S): Mus musculus (Mouse) Cricetulus griseus (Chinese hamster) (Cricetulus barabensis griseus)

2022-08-02 | PXD029115 | Pride