Raabe M M - OmicsDI

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Proteomics (11)
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Homo sapiens (6)
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Xenopus laevis (1)
mouse gut metagenome (1)

Repository

pride (11)
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Disease

Brain cancer (1)
Dilated cardiomyopathy (1)

Technology Type

Mass Spectrometry (11)
Bottom-up proteomics (4)
Shotgun proteomics (4)
Gel-based experiment (3)
Data-dependent acquisition (2)
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Chemical cross-linking coupled with mass spectrometry proteomics (1)
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Instrument Platform

HILIC_Neg_Synapt_HDMS (1)
HILIC_Pos_Synapt_HDMS (1)
RP_Neg_Synapt_HDMS (1)
RP_Pos_Synapt_HDMS (1)

Publication Date

2025 (5)
2020 (3)
2021 (2)
2024 (1)
2026 (1)
2023 (1)

CHEBI ID

CHEBI:101278 (1)
CHEBI:10223 (1)
CHEBI:104011 (1)
CHEBI:116314 (1)
CHEBI:1189 (1)
CHEBI:131690 (1)
CHEBI:131692 (1)
CHEBI:131743 (1)
CHEBI:132606 (1)
CHEBI:132607 (1)
CHEBI:132611 (1)
CHEBI:132983 (1)
CHEBI:133086 (1)
CHEBI:133094 (1)
CHEBI:133223 (1)
CHEBI:133530 (1)
CHEBI:133657 (1)
CHEBI:137814 (1)
CHEBI:137889 (1)
CHEBI:138421 (1)
CHEBI:140773 (1)
CHEBI:142593 (1)
CHEBI:143095 (1)
CHEBI:143912 (1)
CHEBI:145242 (1)
CHEBI:145254 (1)
CHEBI:145258 (1)
CHEBI:145278 (1)
CHEBI:145284 (1)
CHEBI:145297 (1)

Metabolite Name

(-)-Neoisomenthol (1)
(S)-3,4-Dihydroxybutyric acid (1)
1-Phenylheptane (1)
1-Tridecene (1)
10Z-Nonadecenoic acid (1)
15-Deoxy-d-12,14-PGJ2 (1)
16-Hydroxypregnenolone (1)
19,20-DiHDPA (1)
2,4-Di-tert-butylphenol (1)
2-Heptanone (1)
2-Hexenal (1)
2-Hydroxymyristic acid (1)
2-Pentylthiophene (1)
2-Undecanol (1)
25,26-dihydroxyvitamin D (1)
3'-O-Methyl-(-)-epicatechin-5-O-sulphate (1)
3,5-Bis(1,1-dimethylethyl)-4-hydroxy-benzoic acid ethyl ester (1)
3-Hexanone (1)
3-Hydroxy-4,5-dimethyl-2(5H)-furanone (1)
4-(1,1,3,3-Tetramethylbutyl)-phenol (1)
4-Aminohippuric acid (1)
4-Hydroxy-5-(3'-hydroxyphenyl)-valeric acid-3'-O-sulphate (1)
4-Hydroxydebrisoquine (1)
4-Hydroxyphenytoin (1)
9E-Heptadecenoic acid (1)
Acetyl citrate (1)
Alpha-Linolenic acid (1)
Alpha-dimorphecolic acid (1)
Benzaldehyde (1)
Benzeneacetamide-4-O-sulphate (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Release Date

2021 (28)
2024 (27)
2023 (20)
2020 (20)
2022 (17)
2025 (13)
2017 (11)
2015 (10)
2018 (9)
2014 (9)
2019 (8)
2016 (8)
2026 (3)
2013 (3)
2011 (3)
2010 (3)
2007 (2)
2004 (2)
2012 (1)
2000 (1)
1998 (1)

Lab affiliation

Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Am Fassberg 11, 37077 Goettingen, Germany (1)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (1)
Division of Pediatric Oncology, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins University School of Medicine, Baltimore, MD. (1)
Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Institute of Experimental Pharmacology and Toxicology; University Medical Center Hamburg-Eppendorf (1)
Juliane Liepe, Head of research group Quantitative and Systems Biology; Max Planck Institute for Multidisciplinary Sciences; Goettingen (D); Germany (lab head). Email: jliepe@mpinat.mpg.de Michele Mishto, Head of the research group Molecular Immunology at King’s College London and the Francis Crick Institute, London (UK). Email: michele.mishto@kcl.ac.uk (1)
Kidney omics and metabolism Institute of Biomedicine Aarhus University Høegh-Guldbergsgade 10 8000 Aarhus C Denmark (1)
King’s British Heart Foundation Centre of Research Excellence, King's College London, United Kingdom (1)
Max-Planck-Institute for Biophysical Chemistry (1)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (1)
University Medical Center Hamburg-Eppendorf, Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)

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iBench Ground Truth Validation Tool 2.0

iBench is an open-source tool that provides enhanced validation of Mass Spectrometry identification methods. In this updated version, iBench 2.0 takes high confidence peptide identifications from previously measured MS data and embeds the sequences in an in silico-only proteome as spliced or non-spl...

ORGANISM(S): Homo sapiens (Human)

2023-12-21 | PXD044451 | Pride

Prediction of toluene/water partition coefficients of SAMPL9 compounds: comparison of the molecular dynamics force fields GAFF/RESP and GAFF/IPolQ-Mod + LJ-fit.

Not available

S-EPMC10806620 | biostudies-literature

Activation of mTORC1/mTORC2 signaling in pediatric low-grade glioma and pilocytic astrocytoma reveals mTOR as a therapeutic target.

Not available

S-EPMC3829599 | biostudies-literature

Temperature Stable Ion Exchange Resins as Catalysts for the Manufacturing of Vitamin Precursors by Aldol Reaction.

Not available

S-EPMC10532307 | biostudies-literature

Analysis of trends in the context of implant therapy in a university surgical specialty clinic: a 20-year retrospective study.

Not available

S-EPMC11666676 | biostudies-literature

Perez-Garcia19 - Computational design of improved standardized chemotherapy protocols for grade 2 oligodendrogliomas

This is a model built by COPASI4.24(Build 197) This a model from the article: Computational design of improved standardized chemotherapy protocols for grade II oligodendrogliomas Víctor M. Pérez-García, Luis E. Ayala-Hernández, Juan Belmonte-Beitia, Philippe Schucht, Michael Murek, Andreas Raabe, ...

2024-09-02 | BIOMD0000000814 | BioModels

Cellular and humoral immunity to Ebola Zaire glycoprotein and viral vector proteins following immunization with recombinant vesicular stomatitis virus-based Ebola vaccine (rVSVΔG-ZEBOV-GP).

Not available

S-EPMC10021073 | biostudies-literature

Invega Hafyera (Paliperidone Palmitate): Extended-Release Injectable Suspension for Patients With Schizophrenia.

Not available

S-EPMC10084407 | biostudies-literature

Defective peroxisomal catabolism of branched fatty acyl coenzyme A in mice lacking the sterol carrier protein-2/sterol carrier protein-x gene function.

Not available

S-EPMC316706 | biostudies-literature

Animal Models for Coffin-Lowry Syndrome: RSK2 and Nervous System Dysfunction.

Not available