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GenomicsGenome-wide mapping of Jun binding site (K562)
Proto-oncogene c-jun is a leucine-zipper containing transcription factor which has a DNA binding domain and a transactivation domain. Jun dimerizes with another transcription factor Fos to form AP1 transcription factor. The AP-1 complex has been implicated in transformation and progression of cancer...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19545 | biostudies-arrayexpress
GenomicsGenome-wide mapping of Fos binding site (K562)
Proto-oncogene c-Fos is a leucine-zipper containing transcription factor which has a DNA binding domain and a transactivation domain. Fos dimerizes with another transcription factor Jun to form AP1 transcription factor. The AP-1 complex has been implicated in transformation and progression of cancer...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19546 | biostudies-arrayexpress
GenomicsGenome-wide mapping of Myc binding site (K562)
Proto-oncogene c-myc encodes a bHLH leucine-zipper containing transcription factor which has a DNA binding domain and a transactivation domain. Myc can dimerize with other factors like Max, Mad, Mnt and Miz and can influence transcription of genes. The c-myc oncogene contributes to the genesis of a ...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19547 | biostudies-arrayexpress
GenomicsGenome-wide mapping of RNA Pol II binding site (GM12878)
We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase II in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells. For data usage terms and condit...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19550 | biostudies-arrayexpress
GenomicsGenome-wide mapping of RNA Pol III binding site (K562)
We report the results of chromatin immunoprecipitation following by high-thoughput tag sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase III in K562 cells. We have also generated a sequenced input DNA datasets for K562 cells. For data usage terms and conditi...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19548 | biostudies-arrayexpress
GenomicsGenome-wide mapping of RNA Pol III binding site (GM12878)
We report the results of chromatin immunoprecipitation following by high-thoughput sequencing (ChIP-Seq) using the GA II platform from Illumina for the human RNA Polymerase III in GM12878 cells. We have also generated a sequenced input DNA datasets for GM12878 cells. For data usage terms and condi...
ORGANISM(S): Homo sapiens 
2009-12-31 | E-GEOD-19549 | biostudies-arrayexpress
TranscriptomicsTranscriptome of wild type N2 worms at embronic stage and starved L1 stage
Transcription factors are key components of regulatory networks that control development, as well as the response to environmental stimuli. We have established an experimental pipeline in C. elegans that permits global identification of the binding sites for transcription factors using chromatin im...
ORGANISM(S): Caenorhabditis elegans 
2009-06-11 | E-GEOD-16552 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor FOS-1::GFP Binding Regions in L2
modENCODE_submission_3224 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-05-24 | E-GEOD-29470 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor FOS-1::GFP Binding Regions in L1
modENCODE_submission_3387 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2012-02-16 | E-GEOD-35868 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor MEF-2::GFP Binding Regions in L1
modENCODE_submission_3071 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2012-05-09 | E-GEOD-37876 | biostudies-arrayexpress
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