Rahman A A - OmicsDI

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Unknown (9292)
Genomics (98)
Proteomics (64)
Transcriptomics (58)
Metabolomics (5)
Methylation profiling (3)
Models (1)
Other (1)

Organisms

Bombyx mori (55)
Schizosaccharomyces pombe (55)
Human immunodeficiency virus 1 (55)
Oryza sativa Indica Group (55)
Sinorhizobium meliloti BL225C (55)
Sus scrofa domesticus (55)
Ostreococcus tauri (55)
Saccharomyces cerevisiae (55)
Synechocystis sp. PCC 6803 (55)
Vitis vinifera (55)
Staphylococcus aureus (55)
Homo sapiens (46)
Entamoeba histolytica (9)
Mus musculus (9)
Caenorhabditis elegans (6)
Rattus norvegicus (4)
Arabidopsis thaliana (3)
Staphylococcus aureus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Mycosarcoma maydis (2)
Burkholderia cenocepacia (1)
bacterium (1)
Vaccinia virus Lister (1)
Macaca mulatta (1)
Escherichia coli O157:H7 str. Sakai (1)
Aspergillus fumigatus (1)
Escherichia coli K-12 (1)
Triticum aestivum (1)
Sus scrofa (1)
Drosophila melanogaster (1)

Organisms

Homo sapiens (14)
Entamoeba histolytica (4)
Bacillus subtilis (3)
Mus musculus (3)
Enterococcus hirae (2)
Mycosarcoma maydis (2)
Bacillus paranthracis (2)
Klebsiella pneumoniae (2)
Falco rusticolus (1)
Bacillus sp. EC6(2025) (1)
Serratia sp. EC4 (1)
Pseudoclavibacter sp. EB4 (1)
Stenotrophomonas sp. EB1 (1)
Mesobacillus sp. LC4 (1)
Proteus faecis (1)
Nesterenkonia sp. CL21 (1)
Bhargavaea sp. LA13 (1)
Priestia sp. LC12 (1)
Oceanicaulis sp. LC35 (1)
Cellulosimicrobium sp. LC18 (1)
Aneurinibacillus migulanus (1)
Artocarpus heterophyllus (1)
Staphylococcus warneri (1)
Pistia stratiotes (1)
Bacillus pacificus (1)
Avena sativa (1)
Anabas testudineus (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Pseudomonas (1)
Enterococcus faecalis (1)

Repository

ENA (71)
pride (55)
biostudies-arrayexpress (54)
EGA (23)
geo (12)
MassIVE (6)
MetaboLights (5)
BioModels (1)
iProX (1)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (11)
Blood plasma (6)
Brain (4)
Blood (3)
Plant cell (2)
Blood serum (2)
Cell suspension culture (2)
Root (2)
Lung (2)
Permanent cell line cell (2)
Epithelial cell (2)
Liver (2)
Neutrophil (2)
Pleural fluid (1)
Oviduct epithelium (1)
Mantle (1)
Epithelial cell of lung (1)
Astrocyte (1)
Sperm (1)
Spermatozoon (1)
Pancreas (1)
Kidney cell (1)
Epithelial cell of cervix (1)
Embryonic stem cell (1)
Skin (1)
Early embryonic cell (1)
Skeletal muscle (1)
Leaf (1)
Kidney (1)
B cell (1)

Disease

Prostate adenocarcinoma (2)
Disease free (2)
Model of metabolic syndrome (1)
Not applicable (1)
Hepatocellular carcinoma (1)
Bacterial exanthem (1)
Immune system disease (1)
Non-alcoholic steatohepatitis (1)
Inflammation (1)
Duchenne muscular dystrophy (1)
Brain glioblastoma multiforme (1)
Mixed disorder as reaction to stress (1)
Lymphoma (1)
Cervix carcinoma (1)
Brain cancer (1)
Glioblastoma (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (24)
Bottom-up proteomics (15)
Illumina 15K (8)
Mass spectrometry (4)
SWATH MS (4)
Gel-based experiment (4)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (3)
Illumina HiSeq 2500 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
MSE (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Velos (2)
TripleTOF 5600 (2)
Q Exactive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
Perkin Elmer, USA (1)
Sequel (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
418 [Affymetrix] (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ XL (1)
LTQ Orbitrap XL (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)
Xevo G2 QTOF (Waters) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2022 (14)
2025 (14)
2026 (10)
2015 (10)
2023 (8)
2024 (7)
2014 (7)
2012 (7)
2021 (7)
2009 (6)
2019 (6)
2020 (6)
2011 (5)
2013 (4)
2010 (4)
2008 (4)
2018 (4)
2016 (3)
2006 (3)
2005 (3)
2017 (2)
2007 (1)

UNIPROT ID/AC

CAD10_MOUSE (1)
KCNA2_MOUSE (1)
DLGP2_MOUSE (1)
PPR29_MOUSE (1)
CP46A_MOUSE (1)
GBRA3_MOUSE (1)
K1549_MOUSE (1)
CLD11_MOUSE (1)
HCN1_MOUSE (1)
KCIP4_MOUSE (1)
GRIA1_MOUSE (1)
TSN2_MOUSE (1)
ST32C_MOUSE (1)
GD1L1_MOUSE (1)
ATCAY_MOUSE (1)
DGKB_MOUSE (1)
GABR1_MOUSE (1)
SC6A1_MOUSE (1)
CTND2_MOUSE (1)
NEGR1_MOUSE (1)
HECAM_MOUSE (1)
SHAN2_MOUSE (1)
F169A_MOUSE (1)
RB39B_MOUSE (1)
GRIA3_MOUSE (1)
ASTN1_MOUSE (1)
CNTP2_MOUSE (1)
UN13A_MOUSE (1)
NFASC_MOUSE (1)
BRSK2_MOUSE (1)

CHEBI ID

CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:18237 (3)
CHEBI:22653 (3)
CHEBI:18186 (3)
CHEBI:16811 (3)
CHEBI:28300 (3)
CHEBI:18257 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:15428 (3)
CHEBI:17754 (3)
CHEBI:16958 (3)
CHEBI:15741 (3)
CHEBI:6650 (3)
CHEBI:28044 (3)
CHEBI:27266 (3)
CHEBI:16010 (3)
CHEBI:17376 (3)
CHEBI:16449 (3)
CHEBI:29016 (3)
CHEBI:78320 (3)
CHEBI:30915 (3)
CHEBI:15756 (3)
CHEBI:30769 (3)
CHEBI:24266 (2)
CHEBI:17521 (2)
CHEBI:33942 (2)
CHEBI:16765 (2)

Metabolite Name

Hypoxanthine (2)
Carnitine (2)
Betaine (2)
Xanthine (2)
SuccinylGSH (1)
SuccinylCys (1)
Methyl-lysine (N) (1)
Isocapric Acid (1)
Dodecanoic acid/Lauric acid (1)
Beta-hydroxyvaleric Acid (1)
Beta Alanine (1)
Aminoadipate (1)
Acetyl-cysteine (1)
Acetyl-aspartate (N) (1)
5-Oxoproline (pyroglutamic acid) (1)
2-hydroxy glutarate (1)
Uridine 3'-monophosphate (1)
Sphingomyelin (d18:2/24:1, d18:1/24:2) (1)
Sphingomyelin (d18:2/16:0, d18:1/16:1) (1)
Myristoyl sulfate (1)
Dehydroisoandrosterone sulfate (1)
Cytidine 3'-monophosphate (1)
Anatabine (1)
2-hydroxyoleic acid (1)
13-methylmyristate (1)
Guanosine 2'-monophosphate (2'-GMP) (1)
Pimelate (heptanedioate) (1)
Oxidized glutathione (GSSG) (1)
Reduced glutathione (GSH) (1)
Isobar: fructose 1,6-diphosphate, glucose 1,6-diphosphate, myo-inositol 1,4 or 1,3-diphosphate (1)

First Public Date

2023 (13)
2026 (12)
2025 (10)
2022 (7)
2019 (7)
2024 (6)
2021 (4)
2014 (4)
2020 (2)
2017 (2)
2016 (2)
2018 (1)
2013 (1)

Modelling Approach

Computational model (1)

Lab affiliation

Shiga University of Medical Science (2)
Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (2)
Systems Biology Ireland, University College Dublin (2)
Division of Infection Medicine, Department of Clinical Sciences, Lund, Lund University, Biomedical Center, Tornavägen 10, SE-22184 Lund, Sweden (1)
Max Planck Institute for Heart and Lung Research (1)
Cellular biology, Moreno lab, UGA, USA (1)
Hubrecht Institute - Royal Academy of Arts and Sciences and University Medical Centre Utrecht, Utrecht, the Netherlands (1)
Pathology and Laboratory Medicine Kansas University Medical Center (1)
Department of Molecular Medicine, The Scripps Research Institute (1)
The Australian Proteome Analysis Facility (APAF) is a service and research facility which is part of the Macquarie Analytical and Fabrication Facility (MAFF) within Macquarie University. (1)
King faisal Specialist Hospital and esearch Center (1)
Discovery Proteomics, Assistant Professor of Proteomics, University of Oxford (1)
The Rockefeller University, Laboratory of Chemical Immunology and Proteomics (1)
Associate Professor, Department of Chemistry and Biochemistry, University of Texas At Arlington (1)
1. Africa Health Research Institute, Durban, South Africa 2. 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL, USA 3. Center for AIDS Research and Center for Free Radical Biology, University of Alabama at Birmingham, Birmingham, AL, USA (1)
University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany (1)
Laboratorio de Referencia e Investigación en Parasitología, Centro Nacional de Microbiología, Instituto de Salud Carlos III (1)
UC Proteomics Laboratory Department of Cancer Biology University of Cincinnati Cincinnati, OH 45267 (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (1)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany (1)
Professor, Gilula Chair in Chemical Biology, The Department of Chemistry, Skaggs Institute for Chemical Biology, The Scripps Research Institute 10550 North Torrey Pines Rd, La Jolla, CA 92037 (1)
Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC (1)
Department of Chemistry, The Scripps Research Institute, USA (1)
Dept of Chemistry, University of Illinois at Urbana-Champaign (1)
St. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, New York, USA. (1)
School of Biosciences University of Sheffield Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (1)
Molecular Signaling Laboratory, Dr. Panjwani Center forMolecular Medicine and Drug Research (PCMD), International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool; Liverpool, UK (1)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

Classification

bacteria (12)
protozoa (4)

Study type

Transcription profiling by array (30)
RNA-seq of coding RNA (9)
Transcription profiling by RT-PCR (3)
Unknown experiment type (2)
Transcription profiling by tiling array (2)
Other (2)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (1238)
2023 (1201)
2021 (1131)
2025 (1055)
2024 (1051)
2020 (776)
2019 (571)
2018 (488)
2017 (370)
2016 (278)
2015 (257)
2014 (206)
2026 (156)
2013 (120)
2012 (112)
2011 (81)
2010 (68)
2009 (61)
2008 (43)
2007 (24)
2006 (18)
2005 (14)
2003 (10)
2001 (6)
2004 (3)
2000 (3)
2002 (2)
1998 (2)
1999 (1)

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Whole-Genome Sequence of Aneurinibacillus migulanus TP115, a Potential Fish Probiotic Isolated from Oreochromis niloticus Gut.

Not available

S-EPMC9670894 | biostudies-literature

Friend or Foe: Whole-Genome Sequence of Pseudomonas aeruginosa TG523, Isolated from the Gut of a Healthy Nile Tilapia (Oreochromis niloticus).

Not available

S-EPMC9872575 | biostudies-literature

Knowledge, Perceptions and Behaviors Related to COVID-19 in a University Setting in Malaysia.

Not available

S-EPMC9035815 | biostudies-literature

Expanding the mutational spectrum of Rahman syndrome: A rare disorder with severe intellectual disability and particular facial features in two Chinese patients.

Not available

S-EPMC8922969 | biostudies-literature

[Tatton-Brown-Rahman syndrome associated with the DNMT3A gene: a case report and literature review].

Not available

S-EPMC7568996 | biostudies-literature

The Tatton-Brown-Rahman Syndrome: A clinical study of 55 individuals with <i>de novo</i> constitutive <i>DNMT3A</i> variants.

Not available

S-EPMC5964628 | biostudies-literature

Suppression of Streptococcosis and Modulation of the Gut Bacteriome in Nile Tilapia (Oreochromis niloticus) by the Marine Sediment Bacteria Bacillus haynesii and Advenella mimigardefordensis.

Not available

S-EPMC9769507 | biostudies-literature

Further delineation of neuropsychiatric findings in Tatton-Brown-Rahman syndrome due to disease-causing variants in DNMT3A: seven new patients.

Not available

S-EPMC7080728 | biostudies-literature

Loss of function Dnmt3a mutation leads to aberrant neutrophil migration

To understand the impact of loss of function DNMT3A mutations in human patients, we performed proteomic analysis on serum samples of patients with Tatton-Brown-Rahman-Syndrome (TBRS). TBRS is an overgrowth syndrome caused by germline mutations in DNMT3A. Serum samples were obtained from 30 TBRS pati...

ORGANISM(S): Homo sapiens (Human)

2026-09-14 | PXD077276 | Pride

COVID-19 Vaccine Booster Hesitancy in Malaysia: A Web-Based Cross-Sectional Study.

Not available

S-EPMC10058917 | biostudies-literature

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