Rahman T T - OmicsDI

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Unknown (3099)
Transcriptomics (26)
Proteomics (24)
Genomics (20)
Metabolomics (5)
Models (1)
Other (1)

Organisms

Homo sapiens (41)
Mus musculus (9)
Caenorhabditis elegans (4)
Entamoeba histolytica (3)
Rattus norvegicus (2)
Toxoplasma gondii GT1 (2)
Burkholderia cenocepacia (1)
bacterium (1)
Macaca mulatta (1)
Aspergillus fumigatus (1)
Arabidopsis thaliana (1)
Architeuthis dux (1)
Sus scrofa domesticus (1)

Organisms

Homo sapiens (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (27)
pride (20)
EGA (17)
MetaboLights (5)
MassIVE (2)
ENA (2)
BioModels (1)
geo (1)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (4)
Brain (2)
Astrocyte (1)
Blood (1)
Blood plasma (1)
Cell suspension culture (1)
Early embryonic cell (1)
Embryonic stem cell (1)
Kidney (1)
Lung (1)
Mantle (1)
Neutrophil (1)
Permanent cell line cell (1)
Pleural fluid (1)
Skeletal muscle (1)
Skin (1)
T cell (1)

Disease

Not applicable (1)
Hepatocellular carcinoma (1)
Bacterial exanthem (1)
Brain glioblastoma multiforme (1)
Disease free (1)
Duchenne muscular dystrophy (1)
Immune system disease (1)

Technology Type

Mass Spectrometry (20)
Illumina 15K (8)
Shotgun proteomics (7)
Bottom-up proteomics (6)
Mass spectrometry (4)
SWATH MS (3)
Gel-based experiment (2)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Perkin Elmer, USA (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
418 [Affymetrix] (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ Orbitrap (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Q Exactive (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2026 (8)
2015 (6)
2009 (5)
2010 (4)
2020 (4)
2022 (3)
2013 (3)
2012 (3)
2018 (3)
2025 (3)
2024 (2)
2011 (2)
2008 (2)
2021 (2)
2019 (2)
2014 (2)
2023 (2)
2016 (1)
2007 (1)

UNIPROT ID/AC

1433B_MOUSE (1)
1433E_MOUSE (1)
1433F_MOUSE (1)
1433G_MOUSE (1)
1433T_MOUSE (1)
1433Z_MOUSE (1)
2A5A_MOUSE (1)
2A5E_MOUSE (1)
2A5G_MOUSE (1)
2AAA_MOUSE (1)
2ABA_MOUSE (1)
3HIDH_MOUSE (1)
4F2_MOUSE (1)
6PGD_MOUSE (1)
6PGL_MOUSE (1)
AAK1_MOUSE (1)
AATC_MOUSE (1)
AATM_MOUSE (1)
ABCB7_MOUSE (1)
ABCE1_MOUSE (1)
ABD12_MOUSE (1)
ABHD6_MOUSE (1)
ABI1_MOUSE (1)
ABLM1_MOUSE (1)
ABLM2_MOUSE (1)
ABR_MOUSE (1)
ACACA_MOUSE (1)
ACAD9_MOUSE (1)
ACADL_MOUSE (1)
ACADM_MOUSE (1)

CHEBI ID

CHEBI:15428 (3)
CHEBI:15741 (3)
CHEBI:15756 (3)
CHEBI:16010 (3)
CHEBI:16449 (3)
CHEBI:16811 (3)
CHEBI:16958 (3)
CHEBI:17376 (3)
CHEBI:17754 (3)
CHEBI:17822 (3)
CHEBI:18186 (3)
CHEBI:18237 (3)
CHEBI:18257 (3)
CHEBI:22653 (3)
CHEBI:24898 (3)
CHEBI:25017 (3)
CHEBI:25094 (3)
CHEBI:26271 (3)
CHEBI:27266 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:29016 (3)
CHEBI:30769 (3)
CHEBI:30915 (3)
CHEBI:6650 (3)
CHEBI:78320 (3)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15676 (2)
CHEBI:15682 (2)

Metabolite Name

Betaine (2)
Carnitine (2)
Hypoxanthine (2)
Sucrose (2)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPI (16:0/20:4) (1)
1-palmitoyl-2-linoleoyl-GPC (16:0/18:2) (1)
1-palmitoyl-2-linoleoyl-GPE (16:0/18:2) (1)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
Machine Learning Model (1)

First Public Date

2026 (2)

Modelling Approach

Computational model (1)

Study type

Transcription profiling by array (13)
RNA-seq of coding RNA (5)
Transcription profiling by RT-PCR (3)
Other (2)
ChIP-chip by array (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (405)
2023 (384)
2021 (375)
2024 (368)
2025 (364)
2020 (256)
2018 (176)
2019 (169)
2017 (119)
2016 (88)
2015 (82)
2014 (65)
2026 (59)
2012 (43)
2013 (41)
2011 (37)
2010 (27)
2009 (25)
2008 (14)
2007 (10)
2005 (7)
2006 (6)
2003 (3)
2001 (1)
1999 (1)
1998 (1)

Lab affiliation

Baylor College of Medicine, Houston, Texas (1)
Cellular biology, Moreno lab, UGA, USA (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Center for Tropical and Emerging Global Diseases; Department of Cellular Biology, University of Georgia, Athens, Georgia, USA (1)
Centre for Proteome Research, Institute of Systems, Molecular and Integrative Biology, University of Liverpool; Liverpool, UK (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Neuro- and Sensory Physiology University Medical Center Göttingen Humboldtallee 23 37073 Göttingen (1)
Discovery Proteomics, Assistant Professor of Proteomics, University of Oxford (1)
Hayley Sharpe, Signalling, Babraham Institute, Cambridge, UK (1)
Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, New York, NY, United States (1)
John van Geest Cancer Research Centre, Nottingham Trent University (1)
Laboratory for Functional Genome Analysis Genzentrum Ludwig-Maximilians-Universität München Feodor-Lynen-Str. 25 D-81377 München Germany (1)
Molecular Pharmacology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, USA. (1)
Oxford Centre for Respiratory Medicine, Churchill Hospital, Oxford University Hospitals NHS Foundation Trust, Oxford, UK (1)
Professor, Institute of Biomaterials & Biomedical Engineering, University of Toronto Canada Research Chair in Stem Cell Bioengineering Terrence Donnelly Centre for Cellular and Biomolecular Research Chief Scientific Officer, Centre for Commercialization of Regenerative Medicine FRSC (1)
School of Biosciences University of Sheffield Firth Court, Western Bank University of Sheffield Sheffield, S10 2TN United Kingdom (1)
St. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, New York, USA. (1)
The Rockefeller University, Laboratory of Chemical Immunology and Proteomics (1)
Toronto General Hospital Research Institute, UniversityHealth Network, Toronto, Canada Department of Medicine, Division of Nephrology, University Health Network, Toronto, Canada (1)
University of Bayreuth, Universitätsstrasse 30, 95447 Bayreuth, Germany (1)

Tags

xref:PubMed:42079650 (1)

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Covalent Targeting of Splicing in T Cells.

Despite significant interest in therapeutic targeting of splicing, few chemical probes are available for the proteins involved in splicing. Here, we show that elaborated stereoisomeric acrylamide EV96 and its analogues lead to a selective T cell state-dependent loss of interleukin 2-inducible T cell...

ORGANISM(S): Homo sapiens (Human)

2024-10-21 | PXD056704 | Pride

Mouse Dendritic and Antigen Presenting Cell RTM-BM-2 Profiler PCR

Infection of mouse bone marrow Flts3L-derived dendritic cells (FL-DCs) with chimeric human T cell leukemia virus type 1 (HTLV-1) results in the upregulation as well as selective downregulation of various DC-specific genes. Mouse bone marrow Flt3L-derived dendritic cells were infected with chimeric H...

ORGANISM(S): Mus musculus

2010-10-28 | E-GEOD-24959 | biostudies-arrayexpress

Mouse Interferon M-NM-1, M-NM-2 RTM-BM-2 Profiler PCR

Infection of mouse bone marrow Flts3L-derived dendritic cells (FL-DCs) with chimeric human T cell leukemia virus type 1 (HTLV-1) results in the upregulation as well as selective downregulation of various interferon-stimulated genes. Mouse bone marrow Flt3L-derived dendritic cells were infected with ...

ORGANISM(S): Mus musculus

2010-10-28 | E-GEOD-24957 | biostudies-arrayexpress

Murine Flt3L-derived dendritic cell-mediated early immune responses are critical to controlling cell-free HTLV-1 infection

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Mus musculus

2010-10-28 | E-GEOD-24962 | biostudies-arrayexpress

Transcription factor profiling of T cells containing stably integrated or transiently transfected HTLV-1 LTR.

Transcription factor profiling of T cells containing stably integrated or transiently transfected HTLV-1 LTR. Nuclear extract from one million stably or transiently transfected Jurkat (CD4 T cell) cell line was extracted and labeled with TransSignal Probe mix (Panomics) and then hybridized to the ar...

ORGANISM(S): Homo sapiens

2011-11-12 | E-GEOD-33628 | biostudies-arrayexpress

[Tatton-Brown-Rahman syndrome associated with the DNMT3A gene: a case report and literature review].

Not available

S-EPMC7568996 | biostudies-literature

Keratoderma-Like T-Cell Dyscrasia: A Case Report.

Not available

S-EPMC11509488 | biostudies-literature

Optimizing T Cell-Based Therapy for Glioblastoma.

Not available

S-EPMC8374079 | biostudies-literature

IL-21 from high-affinity CD4 T cells drives differentiation of brain-resident CD8 T cells during persistent viral infection.