Metaproteomics used bottom-up mass spectrometry to detect and quantify the proteins present in microbiome samples. Historically, the methodology of choice in these analyses has been Data-Dependent Acquisition mass spectrometry (DDA-MS). In this manuscript we see sought to evaluate the reproducibilit...
ORGANISM(S): Enterobacteria phage ES18 Thermus thermophilus Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) Bacteria Stenotrophomonas maltophilia Nitrosospira multiformis Anthracocystis tumefaciens Alteromonas macleodii Archaea Salmonella phage P22 Paracoccus denitrificans Pseudomonas denitrificans (nom. rej.) unclassified Bacillus subtilis group Roseobacter Cupriavidus metallidurans Chlamydomonas reinhardtii Nitrososphaera viennensis Enterobacteria phage f2 Nitrosomonas ureae Escherichia phage M13 Chromobacterium violaceum unclassified Pseudomonas fluorescens group Escherichia coli Pseudomonas cf. pseudoalcaligenes Rhizobium leguminosarum Desulfovibrio vulgaris str. Hildenborough Staphylococcus aureus Paraburkholderia xenovorans
