Ramirez M M - OmicsDI

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Unknown (6120)
Proteomics (80)
Transcriptomics (66)
Metabolomics (12)
Genomics (6)
Models (4)

Organisms

Chlamydomonas reinhardtii (74)
Pseudomonas canadensis (74)
Human alphaherpesvirus 1 strain 17 (74)
Marchantia polymorpha subsp. ruderalis (74)
Methylocystis sp. (74)
Exiguobacterium sp. SH31 (74)
Amaranthus tricolor (74)
Porites pukoensis (74)
Porphyromonas gingivalis W83 (74)
Bothrops insularis (74)
Bothrops jararaca (74)
Bothrops jararacussu (74)
Bothrops cotiara (74)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (74)
Dinosauria (74)
Pseudomonas [fluorescens] SBW25 (74)
Fasciola hepatica (74)
Homo sapiens (38)
Mus musculus (20)
Arabidopsis thaliana (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (4)
Rattus norvegicus (2)
Xenopus laevis (1)
Anopheles gambiae (1)
mixed sample (1)
Aedes aegypti (1)
Streptococcus pneumoniae (1)
Canis lupus familiaris (1)
Drosophila melanogaster (1)
Rattus rattus (1)

Repository

pride (74)
biostudies-arrayexpress (72)
MetaboLights (12)
BioModels (4)
MassIVE (3)
PAXDB (2)
jPOST (1)

Tissue

Cell culture (11)
Epithelial cell (7)
Blood serum (4)
Brain (4)
Blood (4)
Skin (3)
Heart (3)
Cell suspension culture (3)
HeLa cell (3)
Fibroblast (3)
B cell (3)
Bacterial protein (2)
Early embryonic cell (2)
Prokaryotic cell (2)
Lung (2)
Kidney (2)
T cell (2)
Excitatory neuron (1)
Atrial appendage (1)
Cervix squamous epithelium (1)
HuH-7 cell (1)
Exocarp (1)
Retinal pigment epithelial cell (1)
Vero cell (1)
Sperm (1)
Embryonic stem cell (1)
Neural cell (1)
Cerebrospinal fluid (1)
Egg (1)
Plant cell (1)

Disease

Pulmonary tuberculosis (4)
Lymphoid leukemia (2)
Rickettsialpox (2)
Cervix carcinoma (2)
Genetic disease (1)
Tick borne (1)
Temporal lobe epilepsy (1)
Q fever (1)
Candidiasis (1)
Hepatitis C (1)
Plasmodium falciparum malaria (1)
Cancer (1)
Human immunodeficiency virus infectious disease (1)
Melanoma (1)
Atrial fibrillation (1)
Alzheimer's disease (1)
Colon cancer (1)
Acute leukemia (1)

Technology Type

Mass Spectrometry (74)
Shotgun proteomics (29)
Gel-based experiment (13)
Data-dependent acquisition (10)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (9)
Bottom-up proteomics (8)
Data-independent acquisition (7)
MSE (3)
Mass spectrometry assay (2)
SWATH MS (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (4)
Liquid Chromatography MS - negative - hilic (4)
NextSeq 500 (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina HiSeq 4000 (2)
LTQ Orbitrap Elite (2)
G2565BA DNA microarray scanner [Agilent] (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
Illumina HiSeq 2500 (1)
LTQ Velos (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)
Liquid Chromatography MS - - reverse-phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Agilent 7200 Accurate-Mass Q-TOF (1)
6520 Q-TOF LC/MS (Agilent) (1)
Q Exactive (1)
6540 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2026 (18)
2025 (15)
2022 (14)
2012 (13)
2024 (11)
2019 (11)
2013 (10)
2021 (9)
2020 (9)
2015 (9)
2023 (9)
2016 (8)
2009 (8)
2014 (6)
2018 (4)
2011 (4)
2010 (3)
2008 (2)
2017 (2)
2005 (1)
2007 (1)

UNIPROT ID/AC

PAX5_MOUSE (2)
LEF1_MOUSE (2)
CD37_MOUSE (2)
PAMR1_MOUSE (2)
AGRG1_MOUSE (2)
GFRA2_MOUSE (2)
IGLL1_MOUSE (2)
CD79A_MOUSE (2)
NKX32_MOUSE (2)
COE1_MOUSE (2)
LRMP_MOUSE (2)
HIRP3_MOUSE (2)
RUNX1_MOUSE (2)
UHRF1_MOUSE (2)
CDCA7_MOUSE (2)
IMP3_MOUSE (2)
HELLS_MOUSE (2)
CD79B_MOUSE (2)
PP4R4_MOUSE (2)
T2EB_MOUSE (2)
TRPV2_MOUSE (2)
BTK_MOUSE (2)
TOPK_MOUSE (2)
HMGN1_MOUSE (2)
XRN1_MOUSE (2)
SUN2_MOUSE (2)
DNMT1_MOUSE (2)
WDR46_MOUSE (2)
CDK1_MOUSE (2)
FOXP1_MOUSE (2)

CHEBI ID

CHEBI:8927 (1)
CHEBI:168308 (1)
CHEBI:793340 (1)
CHEBI:37632 (1)
CHEBI:24859 (1)
CHEBI:58216 (1)
CHEBI:59908 (1)
CHEBI:37636 (1)
CHEBI:37635 (1)
CHEBI:37634 (1)
CHEBI:58235 (1)
CHEBI:52288 (1)
CHEBI:16759 (1)
CHEBI:27823 (1)
CHEBI:57627 (1)
CHEBI:58414 (1)
CHEBI:57660 (1)
CHEBI:58600 (1)
CHEBI:58039 (1)
CHEBI:36986 (1)
CHEBI:45479 (1)
CHEBI:57561 (1)
CHEBI:57632 (1)
CHEBI:58052 (1)
CHEBI:57658 (1)
CHEBI:28146 (1)
CHEBI:57836 (1)
CHEBI:18402 (1)
CHEBI:57880 (1)
CHEBI:16466 (1)

Metabolite Name

Hypoxanthine (3)
Phosphoenolpyruvate (2)
S-methylcysteine (2)
5,6-dihydrouracil (2)
Ribose (2)
Valine (2)
Spermidine (2)
Myo-inositol (2)
Leucine (2)
Methionine (2)
Lysine (2)
Asparagine (2)
Tyrosine (2)
Serine (2)
Uracil (2)
Citrate (2)
Beta-alanine (2)
Threonine (2)
Proline (2)
Isoleucine (2)
Glutamine (2)
GMP (2)
Ornithine (2)
Glycine (2)
Creatinine (2)
Xanthine (2)
N-octanoic acid (1)
2-oxo-isocaproic acid (1)
3-Methyl-2-oxopentanoic-acid (1)
[4-phenyl-5-(trifluoromethyl)-4H-1,2,4-triazol-3-yl]methanamine (1)

IsPrivate

False (4)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (2)

Modelling Approach

Ordinary differential equation model (3)
Metabolic network (1)
Constraint-based model (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (44)
RNA-seq of coding RNA (7)
ChIP-seq (4)
Cell line - High-throughput sequencing (2)
Transcription profiling by RT-PCR (2)
Comparative genomic hybridization by array (2)
Methylation profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Unknown experiment type (1)
ChIP-chip by array (1)
MicroRNA profiling by high throughput sequencing (1)
ATAC-seq (1)
DNA-seq (1)
CUT&RUN (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2022 (829)
2025 (726)
2023 (723)
2021 (662)
2024 (657)
2020 (510)
2019 (379)
2018 (312)
2017 (256)
2016 (200)
2015 (189)
2014 (142)
2013 (131)
2026 (116)
2012 (99)
2011 (75)
2010 (50)
2009 (48)
2008 (25)
2006 (18)
2007 (15)
2005 (8)
2003 (6)
2004 (4)
2001 (3)
2000 (3)
2002 (2)
1999 (2)
1998 (2)

Lab affiliation

Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (4)
Biomedical Research Center, Slovak Academy of Sciences (2)
German Cancer Research Center Heidelberg University Clinic Heidelberg (2)
Boehringer Ingelheim Pharma GmbH & Co. KG Drug Discovery Sciences (2)
Department of Physiological Sciences, University of Barcelona, IDIBELL, Spain (1)
Mayo Clinic, Rochester, MN (1)
Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry Group, Am Fassberg 11, 37077 Göttingen, Germany University Medical Center Goettingen, Institute for Clinical Chemistry, Bioanalytics, Robert-Koch-Strasse 40, 37075 Göttingen, Germany (1)
Proteomics Facility, National Center for Biotechnology (CSIC). Madrid (Spain) (1)
1.Department of Medical Oncology, Inselspital, Bern University Hospital, University of Bern, 3010 Bern, Switzerland. 2.Department for BioMedical Research, University of Bern, 3008 Bern, Switzerland. 3. Conway Institute for Biomolecular and Biomedical Research, University College Dublin, Dublin D04 V1W8, Ireland. (1)
Department of Immunology, Microbiology and Parasitology Science and Technology Faculty University of the Basque Country (UPV/EHU) Spain (1)
Heidelberg University Biochemistry Center (1)
Instituto de Ecologia, A.C. (INECOL). Red de Estudios Moleculares Avanzados (1)
Institute for Research in Biomedicine, Università della Svizzera italiana, Switzerland (1)
Institute for Integrative Biology of the Cell UMR 9198 CNRS, CEA, Université Paris-Saclay 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette, France (1)
Director, Research Integrity and Compliance Review Office Associate Professor, Mycobacteria Research Laboratories Dept of Microbiology, Immunology,& Pathology Colorado State University Ft. Collins, CO (1)
Histon Modifications Group BioMedical Center Ludwig-Maximilians-Universität Großhadernerstr. 9 82152 Planegg-Martinsried Tel: +49 89 2180 75775 (1)
Institute for Integrative Biology of the Cell Department of Virology - Team: Autophagy and Antiviral Immunity UMR 9198 CNRS, CEA, Université Paris-Saclay 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette France (1)
Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US41 – UAR 2014 – PLBS, F-59000 Lille, France (1)
Department of Biochemistry and Pharmacology, Bio21 Molecular Science and Biotechnology Institute. The University of Melbourne. (1)
Department of Clinical and Toxicological Analysis, Federal University of Alfenas, Brazil (1)
6Department of Molecular Science/UT Health Rio Grande Valley, USA (1)
Food Science Research Institue (CIAL, CSIC-UAM) (1)
Immunology, Microbiology and Parasitology Faculty of Science and Technology University of the Basque Country (UPV/EHU) Spain (1)
Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Argentina (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain; Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Madrid, Spain. (1)
Department of Physiology, Development and Neuroscience, University of Cambridge, Downing Street, Cambridge CB2 3DY, UK. (1)
Department of Cell Biology. Duke University. (1)
Institute of Innate Immunity, University Hospital Bonn (1)
1. Laboratorio de Enfermedades Parasitarias, Facultad de Ciencias Veterinarias, Universidad del Zulia, Maracaibo, Venezuela 2. Department of Biomedical Sciences, School of Medicine, University of Minnesota Duluth. 1035 University Drive, Duluth, MN, 55812 USA (1)
Professor, Microbiology, Immunology, and Pathology Colorado State University Co-Director, Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory (1)

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M/M/Infinity Birth-Death Processes - A Quantitative Representational Framework to Summarize and Explain Phase Singularity and Wavelet Dynamics in Atrial Fibrillation.

Not available

S-EPMC7841497 | biostudies-literature

Profiling of human PBMC exposed to M. leprae

Leprosy is major public health problem in developing countries. M. leprae infects human macrophages and Schwann cells leading to a chronic disease. Leprosy studies are constrained due to the lack of in vitro growth system for M. leprae. Moreover, the overall pathogenesis is poorly understood altho...

ORGANISM(S): Homo sapiens

2007-09-01 | E-GEOD-5765 | biostudies-arrayexpress

Reproductive biology and mating system estimates of two Andean melocacti, Melocactus schatzlii and M. andinus (Cactaceae).

Not available

S-EPMC2802972 | biostudies-literature

A Systematic Review on the Impact of Vaccination for Respiratory Disease on Antibody Titer Responses, Health, and Performance in Beef and Dairy Cattle.

Not available

S-EPMC11680273 | biostudies-literature

Flow-cytometric analysis of membrane integrity of stallion sperm in the face of agglutination: the "zombie sperm" dilemma.

Not available

S-EPMC8490572 | biostudies-literature

Isolation and characterization of a novel rebaudioside M isomer from a bioconversion reaction of rebaudioside A and NMR comparison studies of rebaudioside M isolated from Stevia rebaudiana Bertoni and Stevia rebaudiana Morita.

Not available

S-EPMC4101487 | biostudies-literature

Mitotic raptor promotes mTORC1 activity, G(2)/M cell cycle progression, and internal ribosome entry site-mediated mRNA translation.

Not available

S-EPMC2897579 | biostudies-literature

geoRge: A Computational Tool To Detect the Presence of Stable Isotope Labeling in LC/MS-Based Untargeted Metabolomics

Studying the flow of chemical moieties through the complex set of metabolic reactions that happen in the cell is essential to understanding the alterations in homeostasis that occur in disease. Recently, LC/MS-based untargeted metabolomics and isotopically labeled metabolites have been used to facil...

2015-09-15 | MTBLS213 | MetaboLights

Boosting the Hydrodeoxygenation Activity and Selectivity of Ni/(M)-SBA-15 Catalysts by Chemical Alteration of the Support.

Not available

S-EPMC10652737 | biostudies-literature

Apolipoprotein M Attenuates Anthracycline Cardiotoxicity and Lysosomal Injury.

Not available

S-EPMC10077122 | biostudies-literature

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6288 Results

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