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TranscriptomicsTranscription profiling of HHV-6B viral genes from infected human CD4+ cells in the presence of DNA synthesis inhibitor
Transcriptional profiling of viral genes in the presence of DNA synthesis inhibitor.
ORGANISM(S): Homo sapiens 
2009-08-07 | E-MEXP-2130 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human SupT1 cells 6 to 60 hours after HHV-6B infection without inhibitors
Transcriptional profiling of viral genes.
ORGANISM(S): Homo sapiens 
2010-04-05 | E-MEXP-2129 | biostudies-arrayexpress
GenomicsDistribution of Drosophila insulator proteins Mod(mdg4) and L(3)mbt in Kc cells
Here we map the localization of Mod(mdg4), including Mod(mdg4)2.2 specific and Mod(mdg4) common to all isoforms, to chromatin insulators, as well as the lethal-3 malignant brain tumor protein in Drosophila Kc cells. examination of genomic occupancy for Mod(mdg4)2.2, Mod(mdg4)BTB (all isoforms), and ...
ORGANISM(S): Drosophila melanogaster 
2012-06-18 | E-GEOD-36393 | biostudies-arrayexpress
TranscriptomicsGenome-wide binding profiles of Drosophila melanogaster insulator proteins in Kc and Mbn2 cells
ChIP-chip experiments with NimbleGen whole-genome tiling arrays to compare Su(Hw), dCTCF, BEAF, and CP190 localization on DNA in Kc and Mbn2 cells revealed that BEAF is a third subclass of CP190-containing insulators. The DNA binding proteins, Su(Hw), dCTCF, and BEAF show unique distribution patter...
ORGANISM(S): Drosophila melanogaster 
2010-05-19 | E-GEOD-15661 | biostudies-arrayexpress
TranscriptomicsGene Expression analysis of Kc and Mbn2 cell lines from Drosophila melanogaster.
Comparison of gene expression between Kc and Mbn2 cell lines derived from Drosophila melanogaster. Microarray analysis was performed with two biological replicates for each cell line. Each array contains 15,634 Drosophila genes in duplicate with 12, 60 mer probes per gene.
ORGANISM(S): Drosophila melanogaster 
2010-05-19 | E-GEOD-15660 | biostudies-arrayexpress
TranscriptomicsGene expression analysis of Kc cells from Drosophila melanogaster during ecdysone treatment and CP190 knockdown
This study examines the changes in genes expression that occur in Drosophila melanogaster during the ecdysone response as well as during RNAi knockdown of the insulator protein, CP190. Analysis was performed in Kc cells after 0, 3, and 48 hours of ecdysone treatment in the presence of either contro...
ORGANISM(S): Drosophila melanogaster 
2011-10-13 | E-GEOD-30686 | biostudies-arrayexpress
GenomicsDistribution of Drosophila insulator protein BEAF-32 in Wing imaginal tissue (Wildtype) [ChIP-seq]
Chromatin insulators are DNA protein complexes that mediate inter and intra chromosomal interactions. Boundary Element Associated Factor- 32 (BEAF-32) is an insulator protein predominantly found near gene promoters and thought to play a role in gene expression. We find that mutations in BEAF-32 are ...
ORGANISM(S): Drosophila melanogaster 
2012-07-05 | E-GEOD-36735 | biostudies-arrayexpress
TranscriptomicsGenome wide transcriptional profiling of BEAF-32 in wing imaginal tissues of wildtype and mutants [expresion array]
The mutants in BEAF-32 gene in Drosophila caused the Neoplastic growth. In order to understand the rold of BEAF-32 insulator function in regualtion of gene expression we used the imagial tissue as a model to assay the transcriptional changes. The Imagianl tissues were disected in the icecold PBS an...
ORGANISM(S): Drosophila melanogaster 
2012-07-05 | E-GEOD-36736 | biostudies-arrayexpress
GenomicsBEAF-32 insulator regulates gene expression of genes involved in cell polarity and neoplastic growth.
This SuperSeries is composed of the following subset Series: GSE36735: Distribution of Drosophila insulator protein BEAF-32 in Wing imaginal tissue (Wildtype) [ChIP-seq] GSE36736: Genome wide transcriptional profiling of BEAF-32 in wing imaginal tissues of wildtype and mutants [expresion array] Refe...
ORGANISM(S): Drosophila melanogaster 
2012-07-05 | E-GEOD-36737 | biostudies-arrayexpress
GenomicsDistribution of Drosophila insulator proteins after ecdysone treatment in Kc cells
Here we examine changes in the distribution of Drosophila insulator proteins during the ecdysone response. We performed ChIP-seq analysis in Kc cells at 0, 3, and 48 hours of ecdysone treatment with antibodies against CP190, Su(Hw), dCTCF, and BEAF-32B. Examination of 4 different insulator proteins...
ORGANISM(S): Drosophila melanogaster 
2011-10-13 | E-GEOD-30740 | biostudies-arrayexpress
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