Rasmussen M M - OmicsDI

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Unknown (2162)
Transcriptomics (71)
Proteomics (53)
Metabolomics (24)
Genomics (19)
Multiomics (1)

Organisms

Homo sapiens (63)
Mus musculus (30)
Bacillus subtilis subsp. subtilis str. 168 (8)
Vibrio cholerae (4)
Drosophila melanogaster (4)
Xenopus laevis (4)
Macaca mulatta (3)
Staphylococcus aureus (3)
Macaca fascicularis (2)
cellular organisms (2)
Marmota monax (1)
Macaca nemestrina (1)
Streptococcus thermophilus (1)
Lachancea kluyveri (1)
Bacillus subtilis (1)
Pseudomonas aeruginosa (1)
Rattus norvegicus (1)
Arabidopsis thaliana (1)
Architeuthis dux (1)
Bacteria (1)
Campylobacter jejuni subsp. jejuni (1)
Equus asinus (1)
Saccharomyces cerevisiae (1)
Solanum tuberosum (1)
Sus scrofa domesticus (1)
Toxoplasma gondii RH-88 (1)

Repository

biostudies-arrayexpress (76)
pride (45)
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Tissue

Blood plasma (10)
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Abdominal aorta (1)
Artery (1)
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Bronchoalveolar lavage (1)
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COVID-19 (3)
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Retinitis pigmentosa (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (22)
Mass spectrometry (15)
Bottom-up proteomics (10)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-independent acquisition (6)
Data-dependent acquisition (5)
Mass spectrometry assay (4)
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MSE (2)
SWATH MS (2)
Top-down proteomics (2)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Q Exactive (5)
Exactive (Thermo Scientific) (4)
Liquid Chromatography MS - positive - hilic (3)
Q Exactive HF (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive - reverse-phase (2)
See Description (1)
See Desciption (1)
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Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)
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Xevo G2 QTOF (Waters) (1)
ESI-ION-TRAP (1)

Publication Date

2012 (13)
2010 (12)
2013 (11)
2024 (11)
2015 (10)
2014 (10)
2023 (9)
2020 (9)
2026 (8)
2011 (8)
2019 (8)
2016 (7)
2022 (7)
2025 (6)
2008 (5)
2021 (5)
2017 (5)
2018 (5)
2009 (1)
2007 (1)

CHEBI ID

CHEBI:16737 (6)
CHEBI:16828 (5)
CHEBI:30769 (5)
CHEBI:16196 (4)
CHEBI:16359 (4)
CHEBI:16708 (4)
CHEBI:17295 (4)
CHEBI:17351 (4)
CHEBI:17368 (4)
CHEBI:17895 (4)
CHEBI:18050 (4)
CHEBI:18183 (4)
CHEBI:28865 (4)
CHEBI:7916 (4)
CHEBI:15428 (3)
CHEBI:15603 (3)
CHEBI:15756 (3)
CHEBI:15903 (3)
CHEBI:15971 (3)
CHEBI:16015 (3)
CHEBI:16113 (3)
CHEBI:16335 (3)
CHEBI:16349 (3)
CHEBI:16467 (3)
CHEBI:16755 (3)
CHEBI:17154 (3)
CHEBI:17203 (3)
CHEBI:17268 (3)
CHEBI:17509 (3)
CHEBI:17521 (3)

Metabolite Name

L-Tyrosine (5)
Adenine (4)
Cholic acid (4)
Creatinine (4)
Hypoxanthine (4)
L-Glutamine (4)
L-Tryptophan (4)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (3)
3-Hydroxybutyric acid (3)
Adenosine (3)
Citric acid (3)
Deoxyinosine (3)
Glutathione (3)
Guanosine (3)
Inosine (3)
L-Anserine (3)
L-Arginine (3)
L-Histidine (3)
L-Leucine (3)
L-Phenylalanine (3)
L-Proline (3)
Linoleic acid (3)
Myristoleic acid (3)
N-Acetyl-D-glucosamine (3)
Nicotinamide (3)
Palmitic acid (3)
Pseudouridine (3)
Rutin (3)
Sucrose (3)
Taurine (3)

Modification

Not available (1)

Study type

Transcription profiling by array (50)
Transcription profiling by tiling array (9)
Methylation profiling by high throughput sequencing (4)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (3)
Other (2)
Genotyping by array (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (293)
2025 (235)
2024 (221)
2021 (220)
2023 (214)
2020 (149)
2019 (117)
2017 (108)
2018 (104)
2016 (99)
2015 (97)
2014 (92)
2013 (59)
2011 (58)
2012 (55)
2010 (32)
2026 (31)
2009 (20)
2008 (18)
2006 (4)
2007 (3)
1998 (3)
2004 (2)
2003 (1)
2002 (1)
2001 (1)
1999 (1)

Lab affiliation

Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (5)
Copenhagen University Hospital - Bispebjerg and Frederiksberg Hospital, Copenhagen, Denmark (2)
Director, Research Unit for Precision Regenerative Medicine, Helmholtz Munich Professor, Systems Biology of Airways and Lungs, Ludwig-Maximilians University (LMU) Munich Comprehensive Pneumology Center Munich (CPC-M), Member of the German Center for Lung Research (DZL) (2)
Odense University Hospital, Dept Clinical Biochemistry and Pharmacology, Odense, DK-5000, Denmark (2)
Protein Analysis Group, Department of Pharmacy, University of Copenhagen, Copenhagen, Denmark (2)
Associate Professor, Department of Clinical Biochemistry, Odense University Hospital and Department of Clinical Research, University of Southern Denmark (1)
Centenary Institute, Newtown, New South Wales, Australia (1)
Center for Macroecology, Evolution and Climate, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark. (1)
Centre for Clinical Proteomics, Department of Clinical Biochemistry and Pharmacology, Odense University Hospital, Denmark (1)
Deparment of Molecular Biology and Genetics Aarhus University, Denmark (1)
Department for Biochemistry and Molecular Biology University of Southern Denmark Odense, Denmark (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, 5230 Odense M, Denmark (1)
Department of Chemical Physiology and Biochemistry Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Department of Chemistry and Bioscience Aalborg University Denmark (1)
Department of Clinical Biochemistry, Copenhagen University Hospital, Bispebjerg and Frederiksberg Hospital, Denmark (1)
Department of Microbiology, University of Oslo and Oslo University Hospital, Norway (1)
Department of Molecular Biology and Genetics, Aarhus University, Denmark (1)
Department of Pre-Clinical Sciences, Institute of Veterinary Medicine, Warsaw University of Live Sciences – SGGW Poland (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Director, Research Unit for Precision Regenerative Medicine, Helmholtz Munich Professor, Systems Biology of Airways and Lungs, Ludwig-Maximilians University (LMU) Munich Comprehensive Pneumology Center Munich (CPC-M), Member of the German Center for Lung Research (DZL) (lab head) (1)
Faculty of Medicine, Department of Clinical Sciences Lund, Lund University, Ophthalmology, Lund, Sweden (1)
Independent Research Association (1)
Laboratory for Medical Massspectroemtry Aalborg University (1)
MRC Laboratory of Molecular Biology Francis Crick Avenue Cambridge CB2 0QH, UK (1)
Molecular Cancer Research Group, Department of Medical Biology, University of Tromsø – The Arctic University of Norway, 9037 Tromsø, Norway (1)
National Institute of Occupational Health, Pb 8149 Dep, N-0033, Oslo, Norway (1)
Novo Nordisk Foundation Center for Basic Metabolic Research University of Copenhagen Blegdamsvej 3B, 2200-Copenhagen, Denmark (1)
Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK2200, Copenhagen, Denmark (1)
Novo Nordisk Foundation, Center for Protein Research Faculty of Health and Medical Sciences University of Copenhagen Blegdamsvej 3B, DK-2200 Copenhagen N Denmark (1)
Odense University Hospital, Sdr Boulevard 29, DK-5000 Odense C, Dept Clinical Biochemistry and Pharmacology (1)

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Tissue, urine and serum NMR metabolomics dataset from a 5/6 nephrectomy rat model of chronic kidney disease

Serum, urine and tissue from a rat model of chronic kidney disease (CKD) were analysed using nuclear magnetic resonance (NMR) spectroscopy-based metabolomics methods, and compared with samples from sham operated rats. Both urine and serum were sampled at multiple timepoints, and the results have ...

2020-11-16 | MTBLS2052 | MetaboLights

Nuclear translocation of the tagged endogenous MAPK MPK-1 denotes a subset of activation events in C. elegans development.

Not available

S-EPMC8445601 | biostudies-literature

Diversity and distribution of the Trichoptera of Florida, United States, with descriptions of five new species.

Not available

S-EPMC12712626 | biostudies-literature

Activation of satellite cells and the regeneration of human skeletal muscle are expedited by ingestion of nonsteroidal anti-inflammatory medication.

Not available

S-EPMC4871801 | biostudies-literature

An immunotherapy effect analysis in Rasmussen encephalitis.

Not available

S-EPMC7517818 | biostudies-literature

Aberrant activation of the mTOR signaling pathway in Rasmussen encephalitis.

Not available

S-EPMC11845500 | biostudies-literature

Identification and characterization of the Thermus thermophilus 5-methylcytidine (m5C) methyltransferase modifying 23 S ribosomal RNA (rRNA) base C1942.

Not available

S-EPMC3431712 | biostudies-literature

Host-gut microbiota interactions shape parasite infections in farmed Atlantic salmon

Animals and their associated microbiota share long evolutionary histories. However, it is not always clear how host genotype and microbiota interact to affect phenotype. We applied a hologenomic approach to explore how host-microbiota interactions shape lifetime growth and parasite infection in f...

2024-01-24 | MTBLS8575 | MetaboLights

Regulation of plasma volume in male lowlanders during 4 days of exposure to hypobaric hypoxia equivalent to 3500 m altitude.

Not available

S-EPMC7894546 | biostudies-literature

Multi-site-specific 16S rRNA methyltransferase RsmF from Thermus thermophilus.

Not available

S-EPMC2905757 | biostudies-literature