Rat lc-ms/ms - OmicsDI

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Proteomics (836)
Unknown (614)
Metabolomics (128)
Transcriptomics (11)
Other (8)
Genomics (7)

Organisms

Schizosaccharomyces pombe (754)
Human immunodeficiency virus 1 (754)
Oryza sativa Indica Group (754)
Sinorhizobium meliloti BL225C (754)
Sus scrofa domesticus (754)
Ostreococcus tauri (754)
Saccharomyces cerevisiae (754)
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Rattus norvegicus (754)
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Bursaphelenchus xylophilus (754)
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Methylohalobius crimeensis 10Ki (754)
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cellular organisms (1)
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Organisms

Rattus norvegicus (3)
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Repository

pride (754)
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biostudies-arrayexpress (7)
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geo (5)
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Tissue

Brain (192)
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Cell suspension culture (6)
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Disease

Disease free (30)
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Mixed disorder as reaction to stress (5)
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Not Available (3)
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Cardiomyopathy (2)
Insulinoma (2)
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Hypertension (2)
Type 1 diabetes mellitus (2)
Hepatocellular carcinoma (2)
Amyotrophic lateral sclerosis (2)
Urinary bladder cancer (2)
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Neuroblastoma (2)
Hypertensive (1)
Coronary restenosis (1)

Technology Type

Mass Spectrometry (754)
Shotgun proteomics (434)
Bottom-up proteomics (139)
Data-dependent acquisition (93)
Affinity purification coupled with mass spectrometry proteomics (89)
Mass spectrometry (77)
Gel-based experiment (61)
Mass spectrometry assay (38)
Data-independent acquisition (33)
SWATH MS (31)
Top-down proteomics (30)
HDMSE (9)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Affinity proteomics (5)
SRM/MRM (5)
DiaPASEF (4)
NMR spectroscopy (3)
Metaproteomics (2)
Glycoproteomics (2)
MSE (2)
Mass spectrometry imaging (2)
Proteogenomics (1)
All-ion fragmentation (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (44)
Liquid Chromatography MS - negative - reverse phase (43)
Liquid Chromatography MS - negative - reverse-phase (13)
Liquid Chromatography MS - negative - hilic (12)
Liquid Chromatography MS - positive - hilic (12)
Q Exactive (11)
Q Exactive Plus (5)
LTQ Orbitrap Velos (5)
6560 Q-TOF LC/MS (4)
Orbitrap Fusion Lumos (4)
6530A Q-TOF LC/MS (3)
MaXis (3)
Orbitrap Exploris 480 (3)
Instrument (3)
LTQ Orbitrap Elite (3)
6520A Quadrupole Time-of-Flight LC/MS (2)
Q Exactive HF-X (2)
LTQ Orbitrap (2)
NextSeq 500 (1)
LTQ Orbitrap Discovery (Thermo Scientific) (1)
LTQ FT (1)
Q-Exactive Plus (Thermo Fisher Scientific) LC-MS/MS (1)
Synapt MS (1)
NanoACQUITY UPLC (1)
SolariX (1)
LTQ (1)
TripleTOF 5600 (1)
Impact II (1)
Orbitrap Fusion (1)
Orbitrap Eclipse (1)

Publication Date

2026 (129)
2025 (119)
2022 (117)
2024 (108)
2021 (88)
2018 (79)
2020 (71)
2023 (70)
2019 (57)
2016 (43)
2015 (31)
2017 (29)
2014 (10)
2010 (4)
2013 (2)
2008 (1)
2012 (1)

CHEBI ID

CHEBI:17368 (28)
CHEBI:16704 (28)
CHEBI:16919 (27)
CHEBI:15891 (26)
CHEBI:17154 (25)
CHEBI:16737 (25)
CHEBI:27897 (23)
CHEBI:18257 (23)
CHEBI:16027 (22)
CHEBI:16335 (22)
CHEBI:18211 (22)
CHEBI:16708 (22)
CHEBI:25094 (21)
CHEBI:28044 (21)
CHEBI:17750 (21)
CHEBI:17268 (21)
CHEBI:30769 (21)
CHEBI:26271 (20)
CHEBI:6650 (20)
CHEBI:17568 (20)
CHEBI:17562 (20)
CHEBI:17596 (20)
CHEBI:28300 (19)
CHEBI:18186 (19)
CHEBI:30915 (19)
CHEBI:25017 (19)
CHEBI:73024 (19)
CHEBI:16680 (19)
CHEBI:28867 (19)
CHEBI:15741 (19)

Metabolite Name

Hypoxanthine (29)
Creatine (28)
Uracil (27)
Creatinine (27)
Taurine (26)
Uridine (25)
Cytosine (22)
Inosine (22)
Adenosine (21)
Xanthine (21)
Ornithine (20)
L-Histidine (19)
Taurocholic acid (18)
L-Proline (18)
Cholic acid (17)
Betaine (17)
L-Isoleucine (17)
Riboflavin (17)
Citrulline (17)
Uric acid (17)
Niacinamide (16)
Deoxycholic acid (16)
Indole (16)
Spermidine (16)
Tryptophan (16)
Hippuric acid (16)
Xanthosine (16)
Pantothenic acid (16)
L-Phenylalanine (16)
Thymine (16)

First Public Date

2023 (2)
2026 (1)
2025 (1)
2022 (1)
2015 (1)

Modification

15.994915 (3)
Not available (3)
4-tetrahydrothiazine-3-carboxylic acid (2)
-18.010565 (1)
-17.026549 (1)
42.010565 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)
57.02146 (1)
0.984 (1)
15.99491 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

Transcription profiling by array (4)
RNA-seq of coding RNA (2)
Proteomic profiling by mass spectrometer (1)

Release Date

2021 (67)
2023 (65)
2022 (64)
2024 (58)
2025 (53)
2020 (48)
2017 (42)
2018 (32)
2015 (31)
2016 (28)
2019 (26)
2013 (21)
2012 (19)
2014 (18)
2010 (13)
2008 (10)
2011 (8)
2026 (5)
2007 (4)
2006 (4)
2009 (3)
2005 (2)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (21)
Bioanalytical Mass Spectrometry Research Group, Chemistry Department, Universite du Quebec a Montreal (UQAM), Montreal (Quebec), Canada (5)
Helmholtz-Centre for Environmental Research - UFZ (4)
Department of Molecular Biology and Endocrinology, “VINČA”, Institute of Nuclear Sciences - National Institute of thе Republic of Serbia, University of Belgrade, Belgrade, Serbia (4)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX, USA. (3)
Research Unit for Molecular Medicine, Department of Clinical Medicine, Aarhus University, Denmark (3)
Aarhus University Hospital, Denmark (3)
Manchester Academic Health Science Centre, Division of Cell Matrix Biology & Regenerative Medicine, School of Biological Sciences, Faculty of Biology, Medicine and Health, Manchester, UK (3)
MPIs for Biophysics and Brain Research (3)
Institute of Physiology II Universität Freiburg Germany (3)
Institute of Physiology II, University of Freiburg, Germany (3)
Technion Faculty of Medicine and Network Biology Research Laboratories, (3)
Texas Tech University (3)
Keck MS & Proteomics Resource Yale School of Medicine (3)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Department of Zoology, Institute of Science, Banaras Hindu University, Varanasi-221005, India (2)
Associate Professor, School of Animal Sciences Core Faculty, School of Neuroscience Faculty of Health Sciences Vice Chair, Institutional Biosafety Committee (IBC) Virginia Tech (2)
Target Discovery Institute, NDMRB, University of Oxford (2)
Departments of Biochemistry and Neurology Emory University School of Medicine (2)
1) Department Preclinical Development and Validation, Fraunhofer Institute for Cell Therapy and Immunology IZI, Leipzig, Germany; 2) Institute for Bioanalysis, University of Applied Science Coburg, Coburg, Germany (2)
Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health (2)
Instituto de Investigaciones Marinas (IIM-CSIC) (2)
National Institute of Immunology, New Delhi, India (2)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (2)
Department of Physiology, Faculty of Science, Charles University, 128 00 Prague, Czechia (2)
Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (2)
Univ. Bordeaux, Plateforme Proteome, 33000, Bordeaux, France (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
ProCan®, Children’s Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW, Australia. (2)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (2)

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Rat serum transcriptomic data

study investigated the anti-fatigue effect of the Panax ginseng–Astragali Radix (GGJ) herb pair, the core functional unit of Baoyuan Decoction, using a rat fatigue model induced by forced swimming. Serum samples were collected for untargeted metabolomics analysis by LC-MS/MS to profile differenti...

2026-06-30 | MTBLS14902 | MetaboLights

LipidHunter Identifies Phospholipids by High-Throughput Processing of LC-MS and Shotgun Lipidomics Datasets (Rat cardiomyocyte assay)

Lipids are dynamic constituents of biological systems, rapidly responding to any changes in physiological conditions. Thus, there is a large interest in lipid-derived markers for diagnostic and prognostic applications, especially in translational and systems medicine research. As lipid identificatio...

2018-07-31 | MTBLS483 | MetaboLights

Serum Metabolomics in the Rat Model of Recurrent Pelvic Pain

This study aimed to investigate systemic metabolic alterations underlying pain-depression comorbidity in the Recurrent Pelvic Pain (RPP) rat model using untargeted serum metabolomics (UPLC-Q-Orbitrap-MS). Comparative analysis revealed distinct metabolic profiles, identifying 234 differential meta...

2026-02-11 | MTBLS13869 | MetaboLights

Metabolic profilings of rat INS-1 β-cells under changing levels of essential amino acids

Application of mass spectrometry enables the detection of metabolic differences between organisms with different nutritional settings. Divergence in the metabolic fingerprints of rat pancreatic INS-1 β-cells were systematically captured with regard to 10 individual essential amino acid (EAA) avai...

2022-05-24 | MTBLS3963 | MetaboLights

Untargeted gas chromatography–mass spectrometry-based metabolomics analysis of kidney and liver tissue from the Lewis Polycystic Kidney rat

Polycystic kidney disease (PKD) encompasses a spectrum of inherited disorders that lead to end-stage renal disease (ESRD). There is no cure for PKD and current treatment options are limited to renal replacement therapy and transplantation. A better understanding of the pathobiology of PKD is needed ...

2023-01-26 | MTBLS748 | MetaboLights

Metabolomics dataset of PPAR-pan treated rat liver (eicosanoid assay)

This article contains mass spectrometry (MS) data investigating small molecule changes as an effect of a triple peroxisome proliferator-activated receptor (PPAR-pan) agonist GW625019 in the liver as described in the manuscript “PPAR-pan Activation Induces Hepatic Oxidative Stress and Lipidomic Re...

2016-05-13 | MTBLS278 | MetaboLights

rat bladder LC-MS/MS proteomics

Objective: Bladder outlet obstruction (BOO) is a common urologic disease associated with poorly understood molecular mechanisms. This study aimed to investigate the possible involvements of circRNAs (circular RNAs) and circRNA-encoded proteins in BOO development. Methods: The rat BOO model was esta...

ORGANISM(S): Rattus norvegicus (Rat)

2022-02-22 | PXD029337 | Pride

Global mapping of rat plasma proteins with a native proteomic approach using nondenaturing micro 2DE and label-free quantitative LC-MS/MS

Plasma samples from adult male rats were separated by nondenaturing micro 2DE and a representative gel was selected, on which a total of 136 CBB-stained spots were numbered and subjected to in-gel digestion and label-free quantitative LC-MSE (MS/MS in data-independent acquisition mode). The analysi...

ORGANISM(S): Rattus norvegicus (Rat)

2016-10-14 | PXD004395 | Pride

Native proteomics Adult male rat plasma proteome Nondenaturing micro 2de Global mapping Label-free quantitative lc-mse

Metabolomics dataset of PPAR-pan treated rat liver (acyl-carnitine and aqueous metabolite assays)

2016-05-13 | MTBLS303 | MetaboLights

Efficacy of Zhuyu Pill Intervention in a Cholestasis Rat Model: Mutual Effects on Fecal Metabolism and Microbial Diversity

Cholestasis is a clinical condition resulting from the impairment of bile flow. Currently, patients with cholestasis still face several barriers in seeking diagnosis and treatment. Zhuyu Pill (ZYP) is an ancient classic formula of the Coptis-Evodia herb couples (CEHC), and has been used for chole...

2022-05-30 | MTBLS2721 | MetaboLights

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