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ProteomicsThe S. cerevisiae SUMO stress response is a transcription-dependent conjugation-deconjugation cycle
Not available
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2014-06-16 | MSV000078739 | MassIVE
ProteomicsKCMF1 links RAD6 to UBR4 and lysosome-mediated degradation
Raw mass spec. data files, converted peak lists and TPP results files for KCMF1 links RAD6 to UBR4 and lysosome-mediated degradation by Hong et. al, MCP 2014. RAD6 is a ubiquitin E2 protein with roles in a number of different biological processes. Here, using affinity purification coupled with mass ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-01-01 | MSV000078983 | MassIVE
ProteomicsROS transfer at peroxisome-mitochondria contact sites maintains mitochondrial redox homeostasis
Data deposited contain results from proximity-dependent biotinylation LC-MS (BioID) experiments in which T-REx Flp-In HEK293 cells express ACBD5 or PTPIP51 proteins fused to biotin carboxylase BirA.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2023-11-01 | MSV000093219 | MassIVE
ProteomicsBioID-based identification of SCF-BTrCP1/2 E3 ligase substrates
RAW files, mzML files, search results (gpm.xml), TPP analysis files (pep.XML and prot.XML, as well as tab delimited output of pep.XML as .xls) and analyzed results Table 1 for the identification of BTRCP1/2 substrates using BioID. The identification of ubiquitin E3 ligase substrates has been extrem...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-01-12 | MSV000078991 | MassIVE
ProteomicsBioID-based identification of SCF-BTrCP1/2 E3 ligase substrates
RAW files, mzML files, search results (gpm.xml), TPP analysis files (pep.XML and prot.XML, as well as tab delimited output of pep.XML as .xls) and analyzed results Table 1 for the identification of BTRCP1/2 substrates using BioID. The identification of ubiquitin E3 ligase substrates has been extreme...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2015-02-04 | MSV000079032 | MassIVE
ProteomicsMYC-mutants BioID
Proximity-based biotin labeling assay in HEK293 cells using FlagBirA-Myc (WT and mutants) fusion proteins.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2017-11-20 | MSV000081725 | MassIVE
ProteomicsThe lysosomal lipid transporter LIMP-2 forms lysosome-endoplasmic reticulum STARD3-VapB-dependent contact sites
Flp-In 293 T-REx cells (Thermo Fisher Scientific) stably expressing FlagBirA alone or FlagBirA-LIMP-2 were generated. After selection , cells were incubated for 24 hours in complete media supplemented with tetracycline (Sigma) and biotin (BioShop). Cells were collected and pelleted, the pellets were...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2024-11-20 | MSV000096477 | MassIVE
OtherIdentification of SUMO-2/3 modified proteins associated with mitotic chromosomes.
Data from Massive, ID: MSV000078890, PXD ID: PXD001534. File: MM_8A2_SUMO23_mitosis_C_75KDa_v1.mzml. Published as part of Proteomics. 2014 Nov 4 . From the Abstract: {{i}} ... In this study, we used chromosome spreads to more precisely define the localization of SUMO-2/3 to the inner-centromere and...
ORGANISM(S): Homo_sapiens_viruses, Human_female 
GPM32310005148 | GPMDB
Resource Reanalysis 
ProteomicsAtg16L1 deficiency induces insulin resistance through KLHL9-KLHL13-CUL3 complex-mediated IRS1 degradation
Data contains LC-MS data of proximity-based biotin labeling assay (BioID) to generate the protein interaction network of KLHL9 and KLHL13 proteins fused to FlagBirA (N-terminal tag) and expressed in T-REx HEK293 cells.
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2019-04-02 | MSV000083653 | MassIVE
ProteomicsMYC dephosphorylation by the PP1/PNUTS phosphatase complex regulates chromatin binding and protein stability
Data contains LC-MS data of proximity-based biotin labeling assay (BioID) to generate the protein interaction network of Myc protein fused with FlagBirA (N-terminal tag) and expressed in HeLa cells. Data contains LC-MS data of phosphopeptide-enriched lysates from MCF10 cells
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-05-31 | MSV000082424 | MassIVE
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