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MetabolomicsA metabolite roadmap of the wood-forming tissue in Populus tremula (UPLC-MS assay; Wood fibre and ray cell tissue)

Wood, or secondary xylem, is the product of xylogenesis, a developmental process that begins with the proliferation of cambial derivatives and ends with mature xylem fibers and vessels with lignified secondary cell walls. Fully mature xylem has undergone a series of cellular processes, including ...

2020-09-01 | MTBLS1831 | MetaboLights
MetabolomicsX-ray Irradiation Suppresses Keloid Growth by Inducing G2/M Arrest via the Phytosphingosine-KIF20A Axis
Keloid radiotherapy is clinically effective but has an incomplete underlying molecular mechanism and limited accessibility; we used X-ray exposure to identify effector pathways replicating its antifibrotic benefits without further radiation. After collecting patient keloid samples, primary human kel...
2026-06-06 | MTBLS14461 | MetaboLights
ProteomicsQuantitative Readout of Methionine Residue Solvent Accessibility in E. coli cells Using Radiolytic Hydroxyl Radical Labeling and Mass Spectrometry
Reactive oxygen species play a crucial role in cellular processes, but their effects on protein structure and function in vivo remain challenging to study. Here, we used synchrotron-based X-ray footprinting to probe protein structure in live E. coli, using quantitative LC-coupled mass spectrometry ...
ORGANISM(S): Escherichia coli 
2025-04-10 | PXD061660 | Pride
E. coli X-ray footprinting Covalent labeling Methionine sulfoxide 
TranscriptomicsSensory ray genes
These experiments were undertaken with the goal of identifying genes whose expression is enriched in or restricted to the sensory rays of the C. elegans male tail. We constructed two mutant strains in which ray development is either compromised (EM672) or enhanced (EM673), and harvested mRNA from ad...
ORGANISM(S): Caenorhabditis elegans 
2006-01-05 | E-GEOD-3979 | biostudies-arrayexpress
TranscriptomicsExpression profiles of X-ray responsive miRNA in human cells [miRNA data]
MicroRNA (miRNA) is a type of non-coding RNA that regulates the expression of its target genes by interacting with the complementary sequence of the target mRNA molecules. Recent evidence has shown that genotoxic stress induces miRNA expression, but the target genes involved and role in cellular res...
ORGANISM(S): Homo sapiens 
2014-03-14 | E-GEOD-30130 | biostudies-arrayexpress
TranscriptomicsExpression profiles of X-ray responsive miRNA in human cells
MicroRNA (miRNA) is a type of non-coding RNA that regulates the expression of its target genes by interacting with the complementary sequence of the target mRNA molecules. Recent evidence has shown that genotoxic stress induces miRNA expression, but the target genes involved and role in cellular res...
ORGANISM(S): Homo sapiens 
2014-03-14 | E-GEOD-30132 | biostudies-arrayexpress
TranscriptomicsCharacterization of protoporphytin IX effects on X-ray irradiation in Hela cells in vitro
Hela cells were used to evaluate the protoporphytin IX (PpIX) effects on X-ray irradiation. Treatment conditions were (1) control group (untreated cells); (2) cells treated with 1 μg /ml PpIX for 6 hours; (3) cells irradiated with 3Gy X-rays; (4) cells treated with 1 μg /ml PpIX for 6 hours prior ...
ORGANISM(S): Homo sapiens 
2015-01-21 | E-GEOD-61805 | biostudies-arrayexpress
TranscriptomicsExpression profiles of X-ray responsive miRNA in human cells [mRNA data]
'MicroRNA (miRNA) is a type of non-coding RNA that regulates the expression of its target genes by interacting with the complementary sequence of the target mRNA molecules. Recent evidence has shown that genotoxic stress induces miRNA expression, but the target genes involved and role in cellular re...
ORGANISM(S): Homo sapiens 
2014-03-14 | E-GEOD-30131 | biostudies-arrayexpress
Unknown(E)-N'-(3,3-Diphenyl-allyl-idene)-p-toluene-sulfonohydrazide.
Not available
S-EPMC2977737 | biostudies-literature
TranscriptomicsTranscriptome profiling of E. coli under different naphthoquinone treatments
E. coli MG1655 was grown in the presence of either PL (Plumbagin)/JU (Juglone)/ME (Menadione) (50 micro molar) and DMSO (0.75%)as control, and subjected to microarray analysis. The aim of the work was to understand the structure-function relationship between plumbagin and its analogues.
ORGANISM(S): Escherichia coli 
2013-08-14 | E-MEXP-3765 | biostudies-arrayexpress
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